| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,189,804 – 22,189,898 |
| Length | 94 |
| Max. P | 0.993902 |
| Location | 22,189,804 – 22,189,898 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 75.09 |
| Shannon entropy | 0.46176 |
| G+C content | 0.39538 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -13.92 |
| Energy contribution | -15.28 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.65 |
| SVM RNA-class probability | 0.993902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22189804 94 + 24543557 -------GGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUAGGAAGCCCUGAGCGAACAG -------...(((((((.((((((((.((..(((((((((((......))))))))))))).))))))))..........((((....)))).))))))). ( -28.20, z-score = -2.96, R) >dp4.chrXR_group8 6270874 90 + 9212921 UUUUUGUGUGUGUUUGUGUUUAGCUUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGGUUAGGCAACAACAACAACAACACC----------- .....((((.((((..((((..((((((.(((((((((((((......)))))))))))....)).))))))))))..))))...)))).----------- ( -24.50, z-score = -2.10, R) >droEre2.scaffold_4784 21860257 94 + 25762168 -------GGGUGUUUGCUGCAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUAGGAAGCCCUAAGCGAACAG -------...((((((((..((((((.((..(((((((((((......))))))))))))).))))))............((((....)))))))))))). ( -27.30, z-score = -2.40, R) >droSec1.super_11 2120134 94 + 2888827 -------GGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUAGGAAGCCCUGAGCGAACGG -------...(((((((.((((((((.((..(((((((((((......))))))))))))).))))))))..........((((....)))).))))))). ( -27.50, z-score = -2.59, R) >droSim1.chr3L 21539920 94 + 22553184 -------GGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUAGGAAGCCCUGAGCGAACGG -------...(((((((.((((((((.((..(((((((((((......))))))))))))).))))))))..........((((....)))).))))))). ( -27.50, z-score = -2.59, R) >droVir3.scaffold_13049 14752892 81 + 25233164 -----------GCUUGCU-----CUCGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGAGGACGAGCUAAACAAACCGCCCCCCGACAAACUG---- -----------(((((..-----(((((...(((((((((((......))))))))))))))))..)))))..........................---- ( -21.50, z-score = -3.88, R) >consensus _______GGGUGUUUGUGCUAGGCCUGAGCUUUUGAUUUGACAGUUUAGUUAAAUUAAAUUGGGGUUUAGACAAAAUAAAUAGGAAGCCCUGAGCGAAC_G .............((((.((((((((.((..(((((((((((......))))))))))))).))))))))))))........................... (-13.92 = -15.28 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:01 2011