| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,186,328 – 22,186,425 |
| Length | 97 |
| Max. P | 0.563566 |
| Location | 22,186,328 – 22,186,425 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 81.79 |
| Shannon entropy | 0.29993 |
| G+C content | 0.57282 |
| Mean single sequence MFE | -34.17 |
| Consensus MFE | -21.73 |
| Energy contribution | -21.85 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22186328 97 + 24543557 UUCGGACUCCUCCGAUCUCAGCCAGCGGAGACAAGUGCACUGGCGGAGACAUAAGCCGGGAUUGGAAGCGGGACUGGGAUUGGGAUUAGAAGCUGGG .((((..((.(((((((((((((.(((....).......((((((....)....)))))........)).)).)))))))))))....))..)))). ( -35.30, z-score = -1.61, R) >droSim1.chr3L 21536464 97 + 22553184 CUCGGACUCCUCCGAUCUCAGCCAGCGGAGACAAGUGCACUGGCGGAGAAAUAAGCUGGGAUUGGAAGCUGGACUGGGAUUGAGAUUGGAAGCUGGG (((((..((((((((((((((((((((....).......(..((..(....)..))..)........))))).))))))))).))..)))..))))) ( -41.30, z-score = -3.68, R) >droSec1.super_11 2116695 97 + 2888827 CUCGGACUCCUCCGAUCUCAGCCAGCGGAGACAAGUGCACUGGGGGAGAAAUAAGCUGGGAUUGGAAGCUGGACUGGGAUUGAGAUUGGAAGCUGGG (((((..((((((((((((((((((((....).......(..(...(....)...)..)........))))).))))))))).))..)))..))))) ( -36.30, z-score = -2.17, R) >droYak2.chr3L 22566276 79 + 24197627 CUCGGACUCCCCUGAUCUCGGCCAGCCGAGACAAGUGCAAUGGUGGAGCUAUAAGCCGGGAUUGGAAGUGGAAUUGGGA------------------ (((((..(((((..((((((((..(((.......).)).((((.....))))..))))))))..)..).))).))))).------------------ ( -23.80, z-score = 0.30, R) >consensus CUCGGACUCCUCCGAUCUCAGCCAGCGGAGACAAGUGCACUGGCGGAGAAAUAAGCCGGGAUUGGAAGCGGGACUGGGAUUGAGAUUGGAAGCUGGG .((((......))))(((((((((((.....(((.....(((((..........)))))..)))...))))).)))))).................. (-21.73 = -21.85 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:00 2011