| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,127,633 – 6,127,686 |
| Length | 53 |
| Max. P | 0.969697 |
| Location | 6,127,633 – 6,127,686 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 90.57 |
| Shannon entropy | 0.16963 |
| G+C content | 0.55849 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -18.36 |
| Energy contribution | -17.92 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.46 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6127633 53 - 23011544 AGCGGCCAGCUUAUUUUUGCGCUAUCCUCGCACGGUCACACUGUGCUUGAGCG .((((..(((.((....)).)))..))..((((((.....))))))....)). ( -15.40, z-score = -0.73, R) >droSim1.chr2L 5915274 53 - 22036055 AGCGGGCAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACAUUGUGCUUGAGCG .(((((.((((((....)))))).)))..(((((((...)))))))....)). ( -18.50, z-score = -1.52, R) >droSec1.super_5 4197932 53 - 5866729 AGCGGGCAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACAUUGUGCUUGAGCG .(((((.((((((....)))))).)))..(((((((...)))))))....)). ( -18.50, z-score = -1.52, R) >droYak2.chr2L 15537956 53 + 22324452 AGUGGACAGUGCAUUUUUGCGCUCUCCUCGCACGGUCACACUGUGCUUGAGCG .(.(((.((((((....)))))).))).)((((((.....))))))....... ( -22.20, z-score = -2.82, R) >droEre2.scaffold_4929 15051426 53 - 26641161 AGCGGAAAGUGUAUAUUUGCGCUCUCCUCGCACGGUCACACUGAGUUUGAGCG .(((((.((((((....)))))).)))..((.(((.....))).))....)). ( -14.90, z-score = -0.71, R) >consensus AGCGGACAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACACUGUGCUUGAGCG .(((((.((((((....)))))).)))..(((((((...)))))))....)). (-18.36 = -17.92 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:25 2011