| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,161,811 – 22,161,931 |
| Length | 120 |
| Max. P | 0.980498 |
| Location | 22,161,811 – 22,161,931 |
|---|---|
| Length | 120 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.77 |
| Shannon entropy | 0.22147 |
| G+C content | 0.29933 |
| Mean single sequence MFE | -18.64 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.980498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22161811 120 + 24543557 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGGAAAACACACACACACACACUGACAAUG ......(((.(((......(((((((.(..(((((((((((.((((....))))...)))))))))))..)))))))).((....))..))).)))........................ ( -16.10, z-score = -1.87, R) >droSim1.chr3L 21511650 118 + 22553184 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGGAAAACA--CACACACACACUGGCAAUA .......((((.((.....(((((((.(..(((((((((((.((((....))))...)))))))))))..)))))))).............(.....).--...........)))))).. ( -17.10, z-score = -2.07, R) >droSec1.super_11 2092410 120 + 2888827 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGGAAAACACUCACACACACACUGGCAAUA .......((((.((.....(((((((.(..(((((((((((.((((....))))...)))))))))))..))))))))...........(((.......)))..........)))))).. ( -21.30, z-score = -3.36, R) >droYak2.chr3L 22541945 118 + 24197627 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGGAAAACA--CACACACACACUGGCAAGG ......(((((.((.....(((((((.(..(((((((((((.((((....))))...)))))))))))..)))))))).............(.....).--...........))))))). ( -18.00, z-score = -2.16, R) >droEre2.scaffold_4784 21832907 108 + 25762168 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGGAAAACACACACACAC------------ ......(((.(((......(((((((.(..(((((((((((.((((....))))...)))))))))))..)))))))).((....))..))).)))............------------ ( -16.10, z-score = -2.53, R) >droAna3.scaffold_13337 21326619 112 + 23293914 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGCCACACACACAGAGGCGAAA-------- ((((((((((.(((((...(((.....)))(((((((((((.((((....))))...)))))))))))..))))).)))))))))).....(((.(.......).)))....-------- ( -19.80, z-score = -2.38, R) >droPer1.super_45 373871 110 - 618639 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGGGAGACUCACACACACGC---------- ((((((((((.(((((...(((.....)))(((((((((((.((((....))))...)))))))))))..))))).))))))))))...(((.....)))..........---------- ( -19.20, z-score = -2.41, R) >droVir3.scaffold_13049 14718550 104 + 25233164 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGCCAGA-GCACAAA--------------- ........(((((......(((((((.(..(((((((((((.((((....))))...)))))))))))..))))))))......(........).))-)))....--------------- ( -19.60, z-score = -2.38, R) >droMoj3.scaffold_6680 19494230 104 + 24764193 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGCCAGA-GCACAAA--------------- ........(((((......(((((((.(..(((((((((((.((((....))))...)))))))))))..))))))))......(........).))-)))....--------------- ( -19.60, z-score = -2.38, R) >droGri2.scaffold_15110 6563200 104 - 24565398 UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGCCAGA-GCACAAA--------------- ........(((((......(((((((.(..(((((((((((.((((....))))...)))))))))))..))))))))......(........).))-)))....--------------- ( -19.60, z-score = -2.38, R) >consensus UUUUUAUUUGCUCAAACAAUAUUCGACAUAGUAAUUUUAUGCUUCGACUGCGGAACACAUAAAAUUAUCUUUUGAAUAAAUAAAGAUAAGAGGAAAACACACACACAC_C__________ ((((((((((.(((((...(((.....)))(((((((((((.((((....))))...)))))))))))..))))).)))))))))).................................. (-16.00 = -16.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:59 2011