| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,146,113 – 22,146,215 |
| Length | 102 |
| Max. P | 0.969747 |
| Location | 22,146,113 – 22,146,215 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.76 |
| Shannon entropy | 0.23438 |
| G+C content | 0.56532 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -12.26 |
| Energy contribution | -12.45 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22146113 102 + 24543557 CAGCUACUAGUUACCAGUUGCCAGUUCCAGCAUUCAGCUCCCAACCGAGCAUCCACAUCCCAGCAACCCAGCAUC--------CGAACAUCCCGACAUCGGCAUCAACAG ................((((...((((.........((((......))))............((......))...--------.))))...(((....)))...)))).. ( -16.50, z-score = -2.75, R) >droEre2.scaffold_4784 21817443 101 + 25762168 -------CAGCUACCAGUUGCCAGUUCCAGCACUCAGCUCCCACCCGAGCAUCCACAUCCCAGCAUCCA--CAUCCCAGCAUCCGAACAUCCCGACAUCGGCAUCAGCAG -------..(((......((((.((((.........((((......))))............((.....--.......))....)))).....(....)))))..))).. ( -16.40, z-score = -2.46, R) >droYak2.chr3L 22497483 110 + 24197627 CAGCUACCAGUUACCAGUUGCCAGUUCCAGCAUUCAGCUCCCAACCGAGCAUCCACAUCGCAGCAUCUCACCAUCCCAACAUCCAAACAUCCCGACAUCGGCAUCAGCAG ..(((...........(((((..((....)).....((((......)))).........)))))...........................(((....)))....))).. ( -17.90, z-score = -3.56, R) >droSec1.super_11 2076302 110 + 2888827 CAGCUACCAGUUACCAGUUGCCAGUUCCAGCAUUCAGCUCCCAACCGAGCAUCCACAUCCCAGCAACCCAGCAUCGCAGCAUCCGAGCAUCACGACAUCGGCAUCAGCAG ..(((...........(((((...............((((......))))............((......))...)))))..((((.(.....)...))))....))).. ( -20.30, z-score = -2.54, R) >consensus CAGCUACCAGUUACCAGUUGCCAGUUCCAGCAUUCAGCUCCCAACCGAGCAUCCACAUCCCAGCAACCCAGCAUCCCAGCAUCCGAACAUCCCGACAUCGGCAUCAGCAG .........(((......((((.((((.........((((......))))............((......))............)))).....(....)))))..))).. (-12.26 = -12.45 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:55 2011