| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,142,251 – 22,142,349 |
| Length | 98 |
| Max. P | 0.937107 |
| Location | 22,142,251 – 22,142,349 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 92.21 |
| Shannon entropy | 0.12052 |
| G+C content | 0.35413 |
| Mean single sequence MFE | -14.75 |
| Consensus MFE | -14.10 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22142251 98 - 24543557 AAUCCCCAGCUCAUCCUUGUUUGCCUUACACUGUACGCUACAUUUUAACUUCAAAUUAAGUUUGUGUGCACGUAGCAAACACAACAACAACAAAAACA .................(((((((..(((..(((((((........(((((......))))).))))))).))))))))))................. ( -16.70, z-score = -1.78, R) >droYak2.chr3L 22493723 98 - 24197627 UAUCCCCAACUCAUCCUUGUUUGCCUUACACUUUACGCUACAUUUUAACUUCAAAUUAAGUUUGUGUGCACGUAGCAAACACAACAACAACAAAAACA .................(((((((.........((((.(((((...(((((......))))).)))))..)))))))))))................. ( -14.10, z-score = -1.94, R) >droSec1.super_11 2072342 88 - 2888827 ----------UCAUCCUUGUUUGCCUUACACUUUACGCUACAUUUUAACUUCAAAUUAAGUUUGUGUGCACGUAGCAAACACAACAACAACAAAAACA ----------.......(((((((.........((((.(((((...(((((......))))).)))))..)))))))))))................. ( -14.10, z-score = -1.56, R) >droSim1.chr3L 21490361 88 - 22553184 ----------UCAUCCUUGUUUGCCUUACACUUUACGCUACAUUUUAACUUCAAAUUAAGUUUGUGUGCACGUAGCAAACACAACAACAACAAAAACA ----------.......(((((((.........((((.(((((...(((((......))))).)))))..)))))))))))................. ( -14.10, z-score = -1.56, R) >consensus __________UCAUCCUUGUUUGCCUUACACUUUACGCUACAUUUUAACUUCAAAUUAAGUUUGUGUGCACGUAGCAAACACAACAACAACAAAAACA .................(((((((.........((((.(((((...(((((......))))).)))))..)))))))))))................. (-14.10 = -14.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:53 2011