| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,139,752 – 22,139,850 |
| Length | 98 |
| Max. P | 0.955359 |
| Location | 22,139,752 – 22,139,850 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 99.59 |
| Shannon entropy | 0.00737 |
| G+C content | 0.40000 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -23.38 |
| Energy contribution | -23.22 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.78 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22139752 98 + 24543557 AGUCCUCGACACGGCUGCAUUUUGGCAUUUUGCAGCGGUCGUUUUAUUUUCGUAUCUUUUUUAUUUUGAAGUUUAAUGCCAGAGUCGUGCCUCAUAUU .(((...)))..(((.(((((((((((((..((.((((...........)))).((...........)).))..))))))))))).)))))....... ( -22.70, z-score = -1.61, R) >droSim1.chr3L 21487743 98 + 22553184 AGUCCUCGACACGGCUGCAUUUUGGCAUUUUGCAGCGGUCGUUUUAUUUUCGUAUCUUUUUUAUUUUGAAGUUUAAUGCCAGAGUCGUGCCUCAUAUU .(((...)))..(((.(((((((((((((..((.((((...........)))).((...........)).))..))))))))))).)))))....... ( -22.70, z-score = -1.61, R) >droSec1.super_11 2069727 98 + 2888827 AGUCCUCGACACGGCUGCAUUUUGGCAUUUUGCAGCGGUCGUUUUAUUUUCGUAUCUUUUUUAUUUUGAAGUUUAAUGCCAGAGUCGUGCCUCAUAUU .(((...)))..(((.(((((((((((((..((.((((...........)))).((...........)).))..))))))))))).)))))....... ( -22.70, z-score = -1.61, R) >droYak2.chr3L 22491301 98 + 24197627 AGUCCUCGACACGGCUGCAUUCUGGCAUUUUGCAGCGGUCGUUUUAUUUUCGUAUCUUUUUUAUUUUGAAGUUUAAUGCCAGAGUCGUGCCUCAUAUU .(((...)))..(((.(((((((((((((..((.((((...........)))).((...........)).))..))))))))))).)))))....... ( -25.30, z-score = -2.47, R) >droEre2.scaffold_4784 21811144 98 + 25762168 AGUCCUCGACACGGCUGCAUUUUGGCAUUUUGCAGCGGUCGUUUUAUUUUCGUAUCUUUUUUAUUUUGAAGUUUAAUGCCAGAGUCGUGCCUCAUAUU .(((...)))..(((.(((((((((((((..((.((((...........)))).((...........)).))..))))))))))).)))))....... ( -22.70, z-score = -1.61, R) >consensus AGUCCUCGACACGGCUGCAUUUUGGCAUUUUGCAGCGGUCGUUUUAUUUUCGUAUCUUUUUUAUUUUGAAGUUUAAUGCCAGAGUCGUGCCUCAUAUU .(((...)))..(((.(((((((((((((..((.((((...........)))).((...........)).))..))))))))))).)))))....... (-23.38 = -23.22 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:52 2011