| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,137,203 – 22,137,289 |
| Length | 86 |
| Max. P | 0.856665 |
| Location | 22,137,203 – 22,137,289 |
|---|---|
| Length | 86 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 81.04 |
| Shannon entropy | 0.26497 |
| G+C content | 0.32789 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -18.33 |
| Energy contribution | -18.33 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22137203 86 + 24543557 AACUUUAAAGUUUAUAAUUGGAUAAUAUCACAGGUACUGGAGUA-----------------------UUCCAUUUGGAAUUCAGACAGGUAUUGUCCGUUUUUCUAAUC ...................((((((((((....((.(((((...-----------------------((((....))))))))))).))))))))))............ ( -20.20, z-score = -2.32, R) >droSim1.chr3L 21484729 109 + 22553184 AACUUUAAAGUUUAUAAUUGGACAAUAUCACAGGUACUGGAGUUAAGAAAAAAUGGCUAAUGUGGUUUUCCAUUUGGAAUCCCGACAGGUAUUGUCCGUUUUUCGAAUC ...................((((((((((...........(((((........)))))..(((((..((((....))))..)).)))))))))))))............ ( -26.10, z-score = -1.58, R) >droSec1.super_11 2067175 109 + 2888827 AACUUUAAAGUUUAUAAUUGGACAAUAUCACAGGUACUGGAGUUAAGAAAAUAUGGCUAAUGAGGUUUUUCAUUUGGAAUUCAGACAGGUAUUGUCCGUUUUACGAAUC .........(((..(((.(((((((((((....((.(((((((((........)))).((((((....)))))).....))))))).)))))))))))..)))..))). ( -22.60, z-score = -1.38, R) >consensus AACUUUAAAGUUUAUAAUUGGACAAUAUCACAGGUACUGGAGUUAAGAAAA_AUGGCUAAUG_GGUUUUCCAUUUGGAAUUCAGACAGGUAUUGUCCGUUUUUCGAAUC ...................((((((((((....((.(((((.............((((.....))))((((....))))))))))).))))))))))............ (-18.33 = -18.33 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:51 2011