| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,121,259 – 22,121,331 |
| Length | 72 |
| Max. P | 0.561039 |
| Location | 22,121,259 – 22,121,331 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 63.03 |
| Shannon entropy | 0.67844 |
| G+C content | 0.48193 |
| Mean single sequence MFE | -15.58 |
| Consensus MFE | -7.84 |
| Energy contribution | -6.79 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.77 |
| Mean z-score | -0.50 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22121259 72 + 24543557 -----------UUUGCUGACUCUAUUGAUAUUCGUCAGAUCCGAUAUACUUCCGAUACCGUGUGGCCGUGCCGCGGGUAUAAU -----------....(((((.............)))))................(((((.((((((...)))))))))))... ( -17.82, z-score = -0.53, R) >droSim1.chr3L 21468322 72 + 22553184 -----------CCUGCAGACUCUAUUGAUAUUCGCCAGAUCCGAUAUACUUCCUAUACCGUGUGGCCAUGCCACUGGUAUAAU -----------.(((..((.((....))...))..)))...............(((((((.(((((...)))))))))))).. ( -16.20, z-score = -1.40, R) >droSec1.super_11 2050705 72 + 2888827 -----------CCUGCAGACUCUAUUGAAAUUCGCCAGAUCCGAUAUACUUCCGAUACCGUGUGGCCAUGCCGCUGGUAUAAU -----------.(((..((.((....))...))..)))................((((((.(((((...)))))))))))... ( -14.70, z-score = -0.47, R) >droYak2.chr3L 22464990 72 + 24197627 -----------UCUGCAGGCUCUAUUGAUUUUCGCCAGAUCCGAUAUACUUCCGAUACCGUGUAUCCGUGCCGCGGGUAUAAU -----------(((((.(((.(....(((((.....))))).(((((((..........))))))).).))))))))...... ( -17.10, z-score = -0.36, R) >droEre2.scaffold_4784 21792093 72 + 25762168 -----------UCUGCAGACUCCAUUGGUCCUCGCCAGAUCCUAUAUACUUCCGAUACCGUGUGGCCGGGCCGCGGGUAUAAU -----------(((((.(....)...(((((..((((.((..(((.........)))..)).)))).))))))))))...... ( -18.80, z-score = 0.51, R) >droAna3.scaffold_13337 21287303 82 + 23293914 CCUAAUAAUUUCCCAUCGACACUUGCCAUUUCCGU-AAUCCCAAUAUGCCCUGGCCACCCCGCAGCCCUGCUGCUGGUAUAAU ........................((((....(((-(.......))))...))))...((.(((((...))))).))...... ( -13.80, z-score = -0.92, R) >droWil1.scaffold_180698 5697 67 + 11422946 -----------UUAGCUAACUAGCCAAACUUCUGU--GACAUAAUAUACCCUUACGAAUACCUCAUAAGCCGAGGGGUAU--- -----------...(((....)))...........--........((((((((.((..............))))))))))--- ( -10.64, z-score = -0.31, R) >consensus ___________UCUGCAGACUCUAUUGAUAUUCGCCAGAUCCGAUAUACUUCCGAUACCGUGUGGCCAUGCCGCGGGUAUAAU ............................................((((((..((....)).(((((...))))).)))))).. ( -7.84 = -6.79 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:50 2011