| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,114,148 – 6,114,244 |
| Length | 96 |
| Max. P | 0.908712 |
| Location | 6,114,148 – 6,114,244 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.97 |
| Shannon entropy | 0.36503 |
| G+C content | 0.31865 |
| Mean single sequence MFE | -23.14 |
| Consensus MFE | -15.28 |
| Energy contribution | -14.16 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6114148 96 - 23011544 GAACUUCAAUCUAAUUAAAUGCCCUCCUUUGAUUGAAGGGAUUCGAGUAUACCUUUGGUAUUUGAUUGAUUUAUAC-----------------UAAUAGAUUUUUAAGUUAAG------- .(((((......(((((((((((.((((((....))))))....(((.....))).)))))))))))(((((((..-----------------..)))))))...)))))...------- ( -17.20, z-score = -0.94, R) >droEre2.scaffold_4929 15037406 103 - 26641161 GAACUUCAAUCUAAUUAAAUGCGGUUCUCUGAUUGAAGAGCUUUGAGUAUCCUUUCGGUAUUUGAUUGAUUUAUAC-----------------CAAUGGAUACCAAAGUUUAGCAGCAGA (((((.((...........)).)))))((((.(((..((((((((.((((((.((.(((((...........))))-----------------))).))))))))))))))..))))))) ( -30.80, z-score = -3.82, R) >droYak2.chr2L 15523991 120 + 22324452 GAACUUUAAUCUAAUUAAAUGCGAUUCUUUGAUUGAAGAAACUUGAGAAUCCUUUUGGUAUUUUAUUGAUUUAUACUCUGUAUUGAUUUCACACAAUUGAUACUAAAGUUUAGUUGCAGG (((((((((((.(((.((((((..((((((....)))))).(..(((....)))..))))))).)))))).........((((..(((......)))..))))))))))))......... ( -20.50, z-score = -0.84, R) >droSec1.super_5 4184290 96 - 5866729 GAACUUCAAUCUAAUUAAAUGCGGUCCUUUGAUUGAAGGGAUUCGAGUAUCCCCUCGGUAUUUGAUUGGUUUAUAC-----------------UAAUCGAUUUAUUAGUUAAG------- .((((..((((.....((((((((((((((.....))))))))((((......))))))))))(((((((....))-----------------)))))))))....))))...------- ( -24.00, z-score = -2.07, R) >droSim1.chr2L 5902205 96 - 22036055 GAACUUCAAUCUAAUUAAAUGCGGUCCUUUGAUUGAAGGGAUUCGAGUAUCCCCUCGGUAUUUGAUUGAUUUAUAC-----------------UAAUCGAUUUUUUAGUUAAG------- .((((..((((.((((((((((((((((((.....))))))))((((......))))))))))))))((((.....-----------------.))))))))....))))...------- ( -23.20, z-score = -2.10, R) >consensus GAACUUCAAUCUAAUUAAAUGCGGUCCUUUGAUUGAAGGGAUUCGAGUAUCCCUUCGGUAUUUGAUUGAUUUAUAC_________________UAAUCGAUUUUUAAGUUAAG_______ .......((((.((((((((((..((((((....))))))...((((......))))))))))))))))))................................................. (-15.28 = -14.16 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:24 2011