| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,112,234 – 22,112,324 |
| Length | 90 |
| Max. P | 0.811996 |
| Location | 22,112,234 – 22,112,324 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.42326 |
| G+C content | 0.54350 |
| Mean single sequence MFE | -29.77 |
| Consensus MFE | -18.21 |
| Energy contribution | -18.38 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22112234 90 - 24543557 GAUGAGCAGAUGGGCCAGAUGGGGGAGAAGGACUCGCAGUUCGCAACCUUUUGAGCCCGUCCGAGCAUUUGGAUGGGUCG-UAGUUCAUUU (((((((.(((((((((((.((..(....((((.....)))).)..)).)))).)))))))(((.(.........).)))-..))))))). ( -32.10, z-score = -1.56, R) >droSim1.chr3L 21459302 90 - 22553184 GAUGAGCAGAUGGGGCAGAUGGGGGAGAAGGACUCGCAGUUCGCAACCUUUUGAGCCCGUCCGAGCAUUUGGAUGGGUCG-UAGUUCAUUU (((((((........((((.((..(....((((.....)))).)..)).)))).((((((((((....))))))))))..-..))))))). ( -30.40, z-score = -1.18, R) >droSec1.super_11 2041889 90 - 2888827 GAUGAGCAGAUGGGGCAGAUGGGGGAGAAAGACUCGCAGUUUGCAACCUUUUGAGCCCGUCCGAGCAUUUGGAUGGGUCG-UAGUUCAUUU ((((((((((.((.((((((..(.(((.....))).).))))))..)).)))((.(((((((((....))))))))))).-..))))))). ( -33.60, z-score = -2.66, R) >droYak2.chr3L 22452289 82 - 24197627 GAUGAACACAUGGGGCAGA--------AGGGACUCGCAGUUCGCAACCUUUUGAGCCCGUCCGAGCACUUGGAUGAGUCG-UAGUUCAUUU (((((((((..(((.((((--------(((.....((.....))..)))))))..)))((((((....)))))).....)-).))))))). ( -27.90, z-score = -1.83, R) >droEre2.scaffold_4784 21783816 81 - 25762168 GAUGAGCAGAUGGGGCAGA--------A-GGACUCGCAGUUCGCAACCUUUUGAGCCCGUCCGAGCAUUUGGACGGGUCG-UAGUUCAUUU (((((((........((((--------(-((....((.....))..))))))).((((((((((....))))))))))..-..))))))). ( -31.00, z-score = -2.61, R) >droWil1.scaffold_180955 2860621 79 + 2875958 GCUAAG--AUUUGUGCGGG--------GGCGAUAAGC-GUGGGCAGAGAUGAGGGCCAG-CCAGUCAGCCAGUUGGGUCGCCAGUUCAUUU ......--...((.((...--------((((((.(((-...(((...(((...((....-)).))).))).)))..)))))).)).))... ( -23.60, z-score = 0.22, R) >consensus GAUGAGCAGAUGGGGCAGA________AAGGACUCGCAGUUCGCAACCUUUUGAGCCCGUCCGAGCAUUUGGAUGGGUCG_UAGUUCAUUU (((((((......................((((.....))))..........((.(((((((((....)))))))))))....))))))). (-18.21 = -18.38 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:44 2011