Locus 8335

Sequence ID dm3.chr3L
Location 22,105,516 – 22,105,583
Length 67
Max. P 0.822663
window11450

overview

Window 0

Location 22,105,516 – 22,105,583
Length 67
Sequences 5
Columns 68
Reading direction forward
Mean pairwise identity 80.36
Shannon entropy 0.34399
G+C content 0.60026
Mean single sequence MFE -25.52
Consensus MFE -18.88
Energy contribution -19.72
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.81
SVM RNA-class probability 0.822663
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 22105516 67 + 24543557
ACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAGGUCCAAGCUACUCAUCGCAGUAGGGAAC-
.(((...((((((.......((((((....))))))(((..........)))..)))))).)))...- ( -26.10, z-score =  -1.89, R)
>droEre2.scaffold_4784 21776943 58 + 25762168
ACUCGAGGCUCCGUUUCGGAGGAAGGUGAUCCCUCCGAG----------CUCCUCGUGGAAAAGAAAC
.(.(((((....(((.((((((.........))))))))----------).))))).).......... ( -19.30, z-score =  -0.41, R)
>droYak2.chr3L 22445514 60 + 24197627
ACUCAAGGCUGCGUUUCGGAGGAGGGUCAUCCCUCCGAG-------CUCCUAAUGGCAGUAAGGAAC-
..((...(((((..((.(((((((((....))))))...-------.))).))..)))))...))..- ( -22.40, z-score =  -1.68, R)
>droSec1.super_11 2035011 67 + 2888827
ACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAGCGCCGAGCUGCUCAUCGCAGUAGGGAAA-
.(((...((((((.......((((((....))))))((((((...)).))))..)))))).)))...- ( -29.90, z-score =  -1.90, R)
>droSim1.chr3L 21452373 67 + 22553184
ACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAGCGCCGAGCUGCUCAUCGCAGUAGGGAAC-
.(((...((((((.......((((((....))))))((((((...)).))))..)))))).)))...- ( -29.90, z-score =  -1.96, R)
>consensus
ACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAG__CC_AGCUGCUCAUCGCAGUAGGGAAC_
..((...((((((.......((((((....))))))(((..........)))..))))))...))... (-18.88 = -19.72 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:43 2011