| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,060,573 – 22,060,628 |
| Length | 55 |
| Max. P | 0.959132 |
| Location | 22,060,573 – 22,060,628 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 66.42 |
| Shannon entropy | 0.62070 |
| G+C content | 0.47119 |
| Mean single sequence MFE | -12.89 |
| Consensus MFE | -9.54 |
| Energy contribution | -9.20 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.89 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.959132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22060573 55 - 24543557 ---CUUCCAGCGUAGAGUUUGUGUACGACGCGAAUUCGCAAUGC------GACUCAGGAAAGUA- ---.((((.((((.(((((((((.....)))))))))...))))------......))))....- ( -15.50, z-score = -1.20, R) >droAna3.scaffold_13337 21197545 54 - 23293914 ---CUUCCAAAUUAGGAUUCGCGUCAAACGAGAAUUCGUCGUAC------AAAUGUUCAA-GUG- ---...........((((((.((.....)).)))))).......------..........-...- ( -7.90, z-score = -0.26, R) >dp4.chrXR_group8 6134905 65 - 9212921 UUUCUUAUCAUCGAAGAUUCGUAUGAAACACGAAUCGGGGGAAUGGAAUGGAGUCGAUAAAACAG ....(((((......(((((((.......))))))).........((......)))))))..... ( -10.20, z-score = 0.40, R) >droSim1.chr3L 21406421 55 - 22553184 ---CUUCCAGCGUAGAGUUCGUGUAAGACGCGAAUUCGCAAUGC------GACUCAGGAAAGUA- ---.((((.((((.(((((((((.....)))))))))...))))------......))))....- ( -17.60, z-score = -2.27, R) >droSec1.super_11 1995387 55 - 2888827 ---CUUCCAGCGUAGAGUUCGUGUAAGACGCGAAUUCGCAAUGC------GACUCAGGAAAGUA- ---.((((.((((.(((((((((.....)))))))))...))))------......))))....- ( -17.60, z-score = -2.27, R) >droYak2.chr3L_random 211961 55 - 4797643 ---CUUCCAGCCUAGUGUUCGUGUUAGGCGCGAACUCGCAAUCC------GACUCAGCAAAGUA- ---......((..((((((((((.....))))))).((.....)------))))..))......- ( -12.30, z-score = -0.49, R) >droEre2.scaffold_4784 21736713 55 - 25762168 ---CUUCCAGCCUGGAAUUCGUGUAGGAUCCGAAUUCGCAAUCC------GACUCAGCAAUGUA- ---.((((.....))))...(.((.((((.((....))..))))------.)).).........- ( -9.10, z-score = 0.48, R) >consensus ___CUUCCAGCCUAGAGUUCGUGUAAGACGCGAAUUCGCAAUGC______GACUCAGCAAAGUA_ ..............(((((((((.....)))))))))............................ ( -9.54 = -9.20 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:36 2011