| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,112,443 – 6,112,535 |
| Length | 92 |
| Max. P | 0.698612 |
| Location | 6,112,443 – 6,112,535 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 85.81 |
| Shannon entropy | 0.19753 |
| G+C content | 0.28925 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.07 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6112443 92 - 23011544 ---------UAUCUUAGCAAUUAUCAAUGAGUAUCUGAUAGUCCAGCUAUUCUUACAUGAUUUAGUUAUAAAGCUGUCGAUACUCGAAAAUAAUGAUCAAA ---------..........(((((...((((((((.((((((..(((((.((......))..))))).....))))))))))))))...)))))....... ( -20.10, z-score = -2.38, R) >droSec1.super_5 4182550 101 - 5866729 AGUUAUUAAUAUCUAAGCAAUUAUCAAUGAGUAUCUGAUAGUCCAGCUUUUCGAAUAUGAUUUAGUUAUAAGGCUGUCGAUACUCGAAAAUAAUGAUACAA .(((((((.....(((....)))....((((((((.(((((((.((((..((......))...))))....)))))))))))))))....))))))).... ( -22.90, z-score = -2.38, R) >droSim1.chr2L 5900466 101 - 22036055 AGUUAUUAAUAUUUAAGCAAUUAUCAAUGAGUAUCUGAUAGUCCAGCUAUUCGGAUAUGAUUUACUUUUAAAGCUGUCGAUACUCCAAAAUAAUGAUCCAA .(((((((.....(((....))).....(((((((.((((((((........))......((((....))))))))))))))))).....))))))).... ( -16.70, z-score = -0.89, R) >consensus AGUUAUUAAUAUCUAAGCAAUUAUCAAUGAGUAUCUGAUAGUCCAGCUAUUCGAAUAUGAUUUAGUUAUAAAGCUGUCGAUACUCGAAAAUAAUGAUCCAA ...................(((((...((((((((.((((((..((((..((......))...)))).....))))))))))))))...)))))....... (-15.40 = -16.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:23 2011