| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,042,475 – 22,042,579 |
| Length | 104 |
| Max. P | 0.857553 |
| Location | 22,042,475 – 22,042,579 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.98 |
| Shannon entropy | 0.36711 |
| G+C content | 0.30223 |
| Mean single sequence MFE | -19.24 |
| Consensus MFE | -11.57 |
| Energy contribution | -13.08 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22042475 104 - 24543557 -------------UUUCUCUUUUAGAAGUACACAUAGCUGUCAUUCUUUACCUGACACU-AAAACAUCUUUACUUUUAAAUUAGUAUCAAAAUCGUUGAUUGCAUAUUUGCACUCAGC -------------...((..((((((((((....(((.(((((.........)))))))-).........))))))))))..))..........(((((.((((....)))).))))) ( -20.02, z-score = -3.06, R) >droSim1.chr3L 21388087 104 - 22553184 -------------UUUCCCUUUUAGAAGUAUACAUACCUGUCAUUAUUUACCUGCCACU-AAAAAAUAAUUACUUUUAAAUUAGUAUCAAAAGCGUUGAUUGCAUAUUUGCAGUCAGC -------------.......((((((((((.(((....))).(((((((..........-...)))))))))))))))))..............((((((((((....)))))))))) ( -19.12, z-score = -2.58, R) >droSec1.super_11 1973794 104 - 2888827 -------------UUUCCCUUUUAGAAGUAUACAUACCUGUCAUUAUUUACCUGCCACU-AAAAAAUAAUUACUUUUAAAUUAGUAUCAAAAGCGUUGAUUGCAUAUUUGCAGUCAGC -------------.......((((((((((.(((....))).(((((((..........-...)))))))))))))))))..............((((((((((....)))))))))) ( -19.12, z-score = -2.58, R) >droYak2.chr3L 22387032 118 - 24197627 GCCCUUAUAGAAGUAUACAUAUAGUGUACAUAUGUAGAUGCCGUUCUUUAUCUGGCACUAAAAACAUAAUUUCUUUUAAAUUUGUCUCAACAGUGUUUUUUGUAUAGUUGCAAUUAGC ....(((.((((((((((.....)))))).(((((((.(((((.........)))))))....)))))..))))..)))...............(((..(((((....)))))..))) ( -18.70, z-score = 0.18, R) >consensus _____________UUUCCCUUUUAGAAGUAUACAUACCUGUCAUUAUUUACCUGCCACU_AAAAAAUAAUUACUUUUAAAUUAGUAUCAAAAGCGUUGAUUGCAUAUUUGCAGUCAGC .....................(((((((((........(((((.........))))).............)))))))))...............((((((((((....)))))))))) (-11.57 = -13.08 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:34 2011