| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,034,487 – 22,034,590 |
| Length | 103 |
| Max. P | 0.689683 |
| Location | 22,034,487 – 22,034,590 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.90 |
| Shannon entropy | 0.41661 |
| G+C content | 0.44245 |
| Mean single sequence MFE | -24.69 |
| Consensus MFE | -15.02 |
| Energy contribution | -16.21 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22034487 103 + 24543557 -----GCCAACUGGCCAAUCAUCGACCAAAACAAGCUGUCAACAACAGCU-----GGCCAUCGACACUAAGAUACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAGCAGA------- -----(((....)))...(((((((((((....((((((.....))))))-----.....((((.(((((((...))))))))))).......))))...)))))))......------- ( -24.40, z-score = -1.69, R) >droSim1.chr3L 21379997 103 + 22553184 -----GCCAACUGGCCAAUCAUCGGCCAAAACAAGCUGUCAACAACAGCU-----GGCCAUCGACACUAAGAUACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAGCAGA------- -----(((....)))...((((((((((......(((((.....))))))-----)))).((((.(((((((...)))))))))))................)))))......------- ( -26.80, z-score = -1.85, R) >droSec1.super_11 1965915 103 + 2888827 -----GCCAACUGGCCAAUCAUCGGCCAAAACAAGCUGUCAACAACAGCU-----GGCCAUCGACACUAAGAUACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAGCAGA------- -----(((....)))...((((((((((......(((((.....))))))-----)))).((((.(((((((...)))))))))))................)))))......------- ( -26.80, z-score = -1.85, R) >droYak2.chr3L 22376992 103 + 24197627 -----AUCAACAGGCCAAUCCUCGGCCAAAACAAGCUGUCACCAACAGCU-----GGCCAUCGACACUAAGAUACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAGCAGA------- -----(((((....(((((....(((((......(((((.....))))))-----)))).((((.(((((((...)))))))))))......)))))...)))))........------- ( -25.40, z-score = -1.51, R) >droEre2.scaffold_4784 21709900 92 + 25762168 -------------GCCAACA---GGCCAAAACAAGCUGUCACCAACAGCU-----AGCCAUCGACACCAAGAUACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAGCCGA------- -------------.......---(((.......((((((.....))))))-----..(((((((..((((.........((.....)).....))))...))))))).)))..------- ( -22.14, z-score = -2.20, R) >droAna3.scaffold_13337 21171810 105 + 23293914 UUCUGCCAUCCUGGCCAAUCCUCGGCCAAAACAAGCUGUCACAACCAGCCAUCCCGCCCAUCGACA--------CUUUUAGUCUGACGUUUAAUUGGAUUUUGAAAAACAAGA------- (((....(((((((((.......)))))((((..((((.......)))).............(((.--------......)))....))))....))))...)))........------- ( -19.70, z-score = -0.56, R) >dp4.chrXR_group8 6109444 115 + 9212921 -----UCAAAGAGUCCAAUCCACGGCCGAAACAAGCUGUCACAGCCAGCCAUCCAGGCCAUCGACAUUGAGACACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAACCCCUCGCAUG -----....((((((((((....((((.......((((.......))))......)))).((((.(((((((...)))))))))))......))))))))))((.((....))))..... ( -26.12, z-score = -1.02, R) >droPer1.super_45 243567 115 - 618639 -----UCAAAGAGUCCAAUCCACGGCCGAAACAAGCUGUCACAGCCAGCCAUCCAGGCCAUCGACAUUGAGACACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAACCCCUCGCAUG -----....((((((((((....((((.......((((.......))))......)))).((((.(((((((...)))))))))))......))))))))))((.((....))))..... ( -26.12, z-score = -1.02, R) >consensus _____GCCAACUGGCCAAUCCUCGGCCAAAACAAGCUGUCACCAACAGCU_____GGCCAUCGACACUAAGAUACUUUUAGUUUGACUUUUAAUUGGAUUUUGAUGGAGCAGA_______ ..............(((((....((((.......((((.......))))......)))).((((.(((((((...)))))))))))......)))))....................... (-15.02 = -16.21 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:33 2011