Locus 8325

Sequence ID dm3.chr3L
Location 22,008,459 – 22,008,538
Length 79
Max. P 0.986841
window11437

overview

Window 7

Location 22,008,459 – 22,008,538
Length 79
Sequences 5
Columns 79
Reading direction forward
Mean pairwise identity 84.86
Shannon entropy 0.27170
G+C content 0.62315
Mean single sequence MFE -37.36
Consensus MFE -27.74
Energy contribution -30.82
Covariance contribution 3.08
Combinations/Pair 1.03
Mean z-score -2.77
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.25
SVM RNA-class probability 0.986841
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 22008459 79 + 24543557
CGCCACGAAUCAGUGGAGUUCACGGGGUCCUCCGUUGGGGGGGCUCCGUGGACUUCGACAUUGGUCUGGAUGGUCUGCU
.(((((.((((((((((((((((((((((((((....))))))))))))))))))...))))))).).).))))..... ( -41.90, z-score =  -3.99, R)
>droEre2.scaffold_4784 21683495 69 + 25762168
UGCCACGAUUCAGUGGAGUUCAGGGGCUCCUCCGACGGGGG----------ACUGCGAUGUGGGUCUGGUUGGUCUGCU
.((((.(((((((.((((((....)))))).)((.(((...----------.)))))...))))))))))......... ( -24.70, z-score =   0.20, R)
>droYak2.chr3L 22345143 79 + 24197627
UGCCACGAUUCAGUAGAGUUCACGGGGUCCUCCGUCGGGGGGACCACGUGGACUUCGUUGUGCGUCUGGAUGGUUUGCU
..(((.(((.(((..(((((((((.((((((((....)))))))).)))))))))..)))...)))))).......... ( -37.70, z-score =  -3.10, R)
>droSec1.super_11 1935116 77 + 2888827
UGCCACGAUUCAGUGGAGUUCACGGGGUCCUCCGUCGGGGG--CUCCGUGGACUUCGACGUGGGUCUGCAUGGUCUGCU
.((((.((((((((((((((((((((((((((....)))))--))))))))))))).)).))))))....))))..... ( -40.10, z-score =  -3.23, R)
>droSim1.chr3L 21353197 78 + 22553184
UGCCACGAUUCAGUGGAGUUCACGGGGUCCUCCGUCGGGGGG-CUCCGUGGACUUCGACGUGGGUCUGCAUGGUCUGCU
.((((.(((((((((((((((((((((((((((...))))))-))))))))))))).)).))))))....))))..... ( -42.40, z-score =  -3.72, R)
>consensus
UGCCACGAUUCAGUGGAGUUCACGGGGUCCUCCGUCGGGGGG_CUCCGUGGACUUCGACGUGGGUCUGGAUGGUCUGCU
.((((.((((((.((((((((((((((.(((((....))))).))))))))))))))...))))))....))))..... (-27.74 = -30.82 +   3.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:32 2011