| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,004,967 – 22,005,034 |
| Length | 67 |
| Max. P | 0.820039 |
| Location | 22,004,967 – 22,005,034 |
|---|---|
| Length | 67 |
| Sequences | 3 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 64.79 |
| Shannon entropy | 0.47457 |
| G+C content | 0.58580 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -12.51 |
| Energy contribution | -12.41 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22004967 67 + 24543557 CAGUGGGCCAGUGGUGCCCA--GUGGUGAUCGGCCACAA----CCCGUGUUGGCCAUAACUUUGGUCCCACAA ..(((((((((.((((((..--..))).)))(((((((.----....)).)))))......)))).))))).. ( -26.20, z-score = -0.75, R) >droAna3.scaffold_13337 21141216 71 + 23293914 --CUGGGACUCCGGAGUCCAAAGUCCGGACACACCACAGAGCCCGCACACUGGUCAUAACUUUUGUGUGGGAA --(((((..((((((.(....).))))))....)).)))..((((((((..(((....)))..)))))))).. ( -28.70, z-score = -2.36, R) >droSec1.super_11 1931431 67 + 2888827 CAGUGGGACAGUGGUGGCCA--GUGGGGGUCGGCCACAA----CCCGUGUUGGCUAUAACUUUGGUCCCACAA ..((((((((((.(((((((--..(.((((.(....).)----))).)..))))))).)))...))))))).. ( -35.30, z-score = -3.33, R) >consensus CAGUGGGACAGUGGUGCCCA__GUGGGGAUCGGCCACAA____CCCGUGUUGGCCAUAACUUUGGUCCCACAA ..(((((((...((...))............(((((..............))))).........))))))).. (-12.51 = -12.41 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:29 2011