| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,995,798 – 21,995,866 |
| Length | 68 |
| Max. P | 0.878367 |
| Location | 21,995,798 – 21,995,866 |
|---|---|
| Length | 68 |
| Sequences | 6 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 81.11 |
| Shannon entropy | 0.33543 |
| G+C content | 0.48281 |
| Mean single sequence MFE | -16.98 |
| Consensus MFE | -10.62 |
| Energy contribution | -10.77 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21995798 68 - 24543557 UUGCGACGGAGACGAGACGGGACGGUGACCUCCUGGGCUCGUUAUUAUGCAGAAGAAAAUAAUAACAA .......(....)(((.(((((.(....).)))))..)))((((((((..........)))))))).. ( -21.50, z-score = -3.22, R) >droAna3.scaffold_13337 21132423 51 - 23293914 CUGCGACG----------------GCGACCUGCUGGGCUCGUUAUUAUGCAACAAAAAAUAAUAUAA- .(((((..----------------((((((.....)).))))..))..)))................- ( -9.40, z-score = -0.60, R) >droEre2.scaffold_4784 21670842 58 - 25762168 CUGCGGUGGAGACG----------GCGACCUCCUGGGCUCGUUAUUAUGCAGAGGAAAAUAAUAACAA (((((..(....)(----------((((((.....)).)))))....)))))................ ( -13.80, z-score = -0.54, R) >droYak2.chr3L 22326647 58 - 24197627 CUGCGACGGAGACG----------GCGACCUCUUGGGCUCGUUAUUAUGCAGAAGAAAAUAAUAACAA (((((.((....))----------((((((.....)).)))).....)))))................ ( -15.30, z-score = -2.18, R) >droSec1.super_11 1921813 68 - 2888827 CUGCGACGGAGACGAGACGGGACGGCGACCUCCUGGGCUCGUUAUUAUGCAGAAGAAAAUAAUAACAA (((((.....((((((.(((((.(....).)))))..))))))....)))))................ ( -22.20, z-score = -3.37, R) >droSim1.chr3L 21340030 68 - 22553184 CUGCGACGGAGACGAGACGGGACAGCGACCUCCUGGGCUCGUUAUUAUGCAGAAGAAAAUAAUAACAA (((((.((....)).((((((.(((.(....))))..))))))....)))))................ ( -19.70, z-score = -2.74, R) >consensus CUGCGACGGAGACG__________GCGACCUCCUGGGCUCGUUAUUAUGCAGAAGAAAAUAAUAACAA (((((.((....))..........((((((.....)).)))).....)))))................ (-10.62 = -10.77 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:29 2011