| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,987,061 – 21,987,136 |
| Length | 75 |
| Max. P | 0.857541 |
| Location | 21,987,061 – 21,987,136 |
|---|---|
| Length | 75 |
| Sequences | 3 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 86.61 |
| Shannon entropy | 0.18366 |
| G+C content | 0.32300 |
| Mean single sequence MFE | -16.90 |
| Consensus MFE | -12.40 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21987061 75 - 24543557 AUUUUUUAAUGAGUUCUGUCAAAGUCUUGAAUAUUUAUUGCGGAUGCAAUAAGUGUUGGGAUAUGCGUUUUUUAA .......................((((..(.((((((((((....)))))))))))..))))............. ( -15.10, z-score = -1.62, R) >droSim1.chr3L 21326926 74 - 22553184 AUUUUUUAAUCAGUUCUGUCAAAGUCCUGGAUAUCUAAUGCGGAAGCAAUAAGUGUUCAGAACUACAUUGUCUA- .................(.((((((.(((((((..((.(((....))).))..))))))).)))...))).)..- ( -17.80, z-score = -2.76, R) >droSec1.super_11 1912772 74 - 2888827 AUUUUUUAAUCAGUUCUGUCAAAGUCCUGGAUAUCUAAUGCGGAAGCAAUAAGUGUUCAGAACUACAUUGUCUA- .................(.((((((.(((((((..((.(((....))).))..))))))).)))...))).)..- ( -17.80, z-score = -2.76, R) >consensus AUUUUUUAAUCAGUUCUGUCAAAGUCCUGGAUAUCUAAUGCGGAAGCAAUAAGUGUUCAGAACUACAUUGUCUA_ ................(((...(((.((((((((.((.(((....))).)).)))))))).))))))........ (-12.40 = -12.30 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:28 2011