Locus 832

Sequence ID dm3.chr2L
Location 6,110,641 – 6,110,692
Length 51
Max. P 0.603604
window1128

overview

Window 8

Location 6,110,641 – 6,110,692
Length 51
Sequences 3
Columns 51
Reading direction forward
Mean pairwise identity 100.00
Shannon entropy -0.00000
G+C content 0.54902
Mean single sequence MFE -13.50
Consensus MFE -13.50
Energy contribution -13.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.96
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.23
SVM RNA-class probability 0.603604
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 6110641 51 + 23011544
UUUUUCCUUUUCUACAUCGCUUGAGGCGCCACUCAGCCGGCGAACGGUGAG
..............(((((.(((.(((........)))..))).))))).. ( -13.50, z-score =  -0.96, R)
>droSim1.chr2L 5898750 51 + 22036055
UUUUUCCUUUUCUACAUCGCUUGAGGCGCCACUCAGCCGGCGAACGGUGAG
..............(((((.(((.(((........)))..))).))))).. ( -13.50, z-score =  -0.96, R)
>droSec1.super_5 4180835 51 + 5866729
UUUUUCCUUUUCUACAUCGCUUGAGGCGCCACUCAGCCGGCGAACGGUGAG
..............(((((.(((.(((........)))..))).))))).. ( -13.50, z-score =  -0.96, R)
>consensus
UUUUUCCUUUUCUACAUCGCUUGAGGCGCCACUCAGCCGGCGAACGGUGAG
..............(((((.(((.(((........)))..))).))))).. (-13.50 = -13.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:23 2011