| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,983,183 – 21,983,323 |
| Length | 140 |
| Max. P | 0.523454 |
| Location | 21,983,183 – 21,983,323 |
|---|---|
| Length | 140 |
| Sequences | 3 |
| Columns | 180 |
| Reading direction | reverse |
| Mean pairwise identity | 79.59 |
| Shannon entropy | 0.28059 |
| G+C content | 0.32212 |
| Mean single sequence MFE | -34.03 |
| Consensus MFE | -26.53 |
| Energy contribution | -26.87 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21983183 140 - 24543557 AAACAUCAAAGUGAGGGAGGCGGUAGUUUUCCACUGUGAUGAGAAGGCCAUACGGUAU------------------------AUGGAUAAUUCAACGCAAGUUGA---------UUAAA------AAUAAAAAAUCAGAAUUAAAUUACGAUUAUCUAAGUGAAUUUCA-UUUUUAAAUA ...(((((.(((..(((((((....)))))))))).))))).(((((((....)))..------------------------.(((((((((((((....)))))---------(((..------..)))....................))))))))......)))).-.......... ( -29.90, z-score = -2.22, R) >droSec1.super_11 1908859 179 - 2888827 -UCCGUCGAAGUGAGGGAGGCCGUAGUUUUCCACGGUGAUGAGAAGGCCAUACGGUACUCGGAAAUAAUUAUCUCUACAAAGAAGGAUAAUUCAACGCAAGUUGAAUGCAAAUUUUAAACAUUACAAUUAAGUUUCAGAAUUAAAUUACGAUUAUCUAAGUAAAUUUCAUUUUUUUAAUA -......((((((((((((((((((((((((((......)).))))))..)))))).)))........................((((((((((((....)))))))...((((((((((.(((....))))))).))))))..........))))).......)))))))))....... ( -36.10, z-score = -0.84, R) >droSim1.chr3L 21323015 179 - 22553184 -UCCGUCGAAGUGAGGGAGGCCGUAGUUUUCCACGGUGAUGAGAAGGCCAUACGGUACUCGGAAAUAAUUAUCUCUACAAAGAAGGAUAAUUCAACGCAAGUUGAAUGCAAAUUUUAAACAUUACAAUUAAGUUUCAGAAUUAAAUUACGAUUAUCUAAGUAAAUUUCAUUUUUUUAAUA -......((((((((((((((((((((((((((......)).))))))..)))))).)))........................((((((((((((....)))))))...((((((((((.(((....))))))).))))))..........))))).......)))))))))....... ( -36.10, z-score = -0.84, R) >consensus _UCCGUCGAAGUGAGGGAGGCCGUAGUUUUCCACGGUGAUGAGAAGGCCAUACGGUACUCGGAAAUAAUUAUCUCUACAAAGAAGGAUAAUUCAACGCAAGUUGAAUGCAAAUUUUAAACAUUACAAUUAAGUUUCAGAAUUAAAUUACGAUUAUCUAAGUAAAUUUCAUUUUUUUAAUA ...(((((..((..(((((((....)))))))))..))))).(((((((....)))............................((((((((((((....)))))....................((((.((((....)))).))))...))))))).......))))............ (-26.53 = -26.87 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:25 2011