| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,946,299 – 21,946,349 |
| Length | 50 |
| Max. P | 0.865211 |
| Location | 21,946,299 – 21,946,349 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 80.35 |
| Shannon entropy | 0.26916 |
| G+C content | 0.47579 |
| Mean single sequence MFE | -12.33 |
| Consensus MFE | -12.55 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.82 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21946299 50 - 24543557 CGCCAUCUGUUGGCCAUGAAGGCUUUGAGUUGGCUUUUU--------GGAGUUUGUAC .((((.((...((((.....))))...)).)))).....--------........... ( -13.40, z-score = -1.15, R) >droSim1.chr3L 21288612 57 - 22553184 CGCCAUCUGUUGGUCAUGAAGGCUUUAAGUUGGCUCCUUCCCUCAGCAAAUUUCGUA- .((((.((...((((.....))))...)).)))).......................- ( -11.80, z-score = -0.65, R) >droSec1.super_11 1874620 57 - 2888827 CGCCAUCUGUUGGUCAUGAAGGCUUUAAGUUGGCUCCUUCCCUCAGCAAAUUUCGUA- .((((.((...((((.....))))...)).)))).......................- ( -11.80, z-score = -0.65, R) >consensus CGCCAUCUGUUGGUCAUGAAGGCUUUAAGUUGGCUCCUUCCCUCAGCAAAUUUCGUA_ .((((.((...((((.....))))...)).))))........................ (-12.55 = -12.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:19 2011