| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,940,992 – 21,941,103 |
| Length | 111 |
| Max. P | 0.872927 |
| Location | 21,940,992 – 21,941,103 |
|---|---|
| Length | 111 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.27 |
| Shannon entropy | 0.56230 |
| G+C content | 0.58210 |
| Mean single sequence MFE | -41.30 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.57 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.72 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21940992 111 + 24543557 CAGCUCUUGCGCCAGUUCAGCGCACGAAGAUCGAUCGGCAAGCCUGUCAAUCAGUGGCAGGCAGCAGAGAAUCGUCUACGACCAGCUGCAGGAACAACAGU---CCUCGCCUUU ....((.(((((.......))))).)).........(((..((((((((.....)))))))).((((....(((....)))....))))((((.......)---))).)))... ( -37.70, z-score = -1.31, R) >droSim1.chr3L 21281996 111 + 22553184 CAGCUCUUGCGCCAGUUCGGCGCACGAAGAGCGAUCGGCAAGCCUGUCAAUCAGUGGCAGGCAGCAGCGAAUCGUCUACGACCAGCUGCAGGAACAACAGU---CCUCGCCUUU ..(((((((((((.....))))))...)))))....(((..((((((((.....)))))))).(((((...(((....)))...)))))((((.......)---))).)))... ( -51.50, z-score = -4.38, R) >droSec1.super_11 1868044 111 + 2888827 CAGCUCUUGCGCCAGUUCGGCGCACGAAGAGCGAUCGGCAAGCCUGUCAAUCAGUGGCAGGCAGCAGCGAAUCGUCUACGACCAGCUGCAGGAACAACAGU---CCUCGCCUUU ..(((((((((((.....))))))...)))))....(((..((((((((.....)))))))).(((((...(((....)))...)))))((((.......)---))).)))... ( -51.50, z-score = -4.38, R) >droYak2.chr3L 22262594 111 + 24197627 CAGCUCUUGCGCCAGUUCGGCACACGAAGAGCGAUCGGCGAGCCUGUCGAUCAGUGGCAGGCAGCAGCGAAUUGUCUACGACCAGCUGCAGGAACAACAGU---CCUCGCCUUU ..(((((((.(((.....))).))...)))))....(((((((((((((.....)))))))).(((((...(((....)))...))))).(((.......)---)))))))... ( -45.90, z-score = -2.37, R) >droEre2.scaffold_4784 21616363 111 + 25762168 CAGCUCUUGCGCCAGUUCGGCGCACGAGGAGCGAUCGGCGAGCCUGUCGAUCAGUGGCAGGCAGCAGCGAAUCGUCUACGACCAGCUGCAGGAGCAGCAGU---CCUCGCCUUU ..(((((((((((.....))))))...)))))....(((((((((((((.....)))))))).(((((...(((....)))...))))).(((.......)---)))))))... ( -53.30, z-score = -2.56, R) >droAna3.scaffold_13337 21069428 111 + 23293914 CAGUUCUUGUGCCAGCUCGGCGCAUGAUGAGCGUUCGACGAGCGUUUCGAUUAGUGGCAGGCAGCAGCGAAUUGUUUACGAUCAGCUGCAGGAACAACAGG---CAUCCCCCUU ..((((((.((((.(((((((((.......))))....)))))((..(.....)..)).))))(((((..((((....))))..)))))))))))...(((---......))). ( -38.60, z-score = -1.10, R) >dp4.chrXR_group8 6020606 111 + 9212921 CAGCUCCUGCGCCAGCUCAGCGCAGGAGGAGAGAUCAGCAAGCCUGUCGAUCAACGGAAGGCAGCAGCGUAUAGUCUACGAUCAGCUGCAGGAACAACAGU---CGUCGCCAUU ...(((((((((.......)))))))))....((((.(((....))).)))).......(((.(((((.....(....).....))))).(......)...---....)))... ( -37.80, z-score = -1.03, R) >droPer1.super_45 155246 111 - 618639 CAGCUCCUGCGCCAGCUCAGCGCAGGAGGAGAGAUCAGCAAGCCUAUCGAUCAACGGUAGGCAGCAGCGUAUAGUCUACGAUCAGCUGCAGGAACAACAGU---CGUCGCCAUU ....((((((((.......))))))))((.(((((......((((((((.....)))))))).(((((.....(....).....)))))..........))---).)).))... ( -41.40, z-score = -2.70, R) >droWil1.scaffold_180949 4497383 105 - 6375548 CAGUUCGUGCGAGGAUCGAUCUUUAAGUCUAUCACUGAAUGG---------UAGCAGGCAUCAGCAGAGAAUUGUCUAUGAUCAAUUGCAGGAGCAUCAAUCGCUAUCGCCAUU ..((((.(((((.(((((........(.((((((.....)))---------))))(((((((......))..))))).)))))..))))).)))).......((....)).... ( -25.50, z-score = 0.27, R) >droVir3.scaffold_13049 20906461 102 + 25233164 UAGCUCUUGCGCCAGCUCCGCGCCCGAUGAGCGUUCGU------------UAAGUGGCCGCCAGCAGCGCAUUGUGUACGAUCAGUUGCAGGAUCAACAGGGCGGAUCGCCCUU ..((...(((((..(((..(((.(((...(((....))------------)...))).))).))).)))))..))....((((........))))...((((((...)))))). ( -33.60, z-score = 0.82, R) >droMoj3.scaffold_6680 15252107 102 + 24764193 CAGUUCGUGUGCCAGCUCGGCGCCCGAUGAGCGCUCGA------------UCAGCGGCCGACAGCAGCGCAUUGUAUACGAUCAGCUGCAGGAUCAGCAGGGCGGGUCCCCAUU ..(((((((((((.....)))))...))))))(((.((------------((...(.....).(((((..((((....))))..)))))..))))))).(((......)))... ( -35.40, z-score = 0.89, R) >droGri2.scaffold_15110 1767726 102 - 24565398 CAGCUCCUGCGCCAGUUCGGCACCAGAUGAGCGCUCGA------------UAAGUGGACGCCAGCAGCGCAUUGUUUACGAUCAGCUGCAGGAGCAACAGGGCGGAUCGCCCUA ..((((((((((((.((((((.((....).).)).)))------------..).))).)))..(((((..((((....))))..)))))))))))...((((((...)))))). ( -43.40, z-score = -2.34, R) >consensus CAGCUCUUGCGCCAGUUCGGCGCACGAUGAGCGAUCGGCAAGCCUGUCGAUCAGUGGCAGGCAGCAGCGAAUUGUCUACGAUCAGCUGCAGGAACAACAGU___CCUCGCCUUU ..((((((((((.......))))...))))))...............................(((((...(((....)))...)))))......................... (-18.74 = -18.57 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:18 2011