| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,908,765 – 21,908,819 |
| Length | 54 |
| Max. P | 0.684770 |
| Location | 21,908,765 – 21,908,819 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 98.15 |
| Shannon entropy | 0.03005 |
| G+C content | 0.46759 |
| Mean single sequence MFE | -12.32 |
| Consensus MFE | -12.30 |
| Energy contribution | -12.80 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21908765 54 - 24543557 AUCUUAACAACACGUAUAGCCUAGUUUACUGGGUGAGAAUUCGGCCAGACGUCC ...........((((...(((.(((((.(.....).))))).)))...)))).. ( -10.20, z-score = -0.14, R) >droEre2.scaffold_4784 21583960 54 - 25762168 AUCUUAACAACACGUAUAGCCUAGUUUUCUGGGUGAGAAUUCGGCCAGACGUCC ...........((((...(((.(((((((.....))))))).)))...)))).. ( -14.30, z-score = -1.83, R) >droYak2.chr3L 22223618 54 - 24197627 AUCUUAACAACACGUAUAGCCUAGUUUUCUGGGUGCGAAUUCGGCCAGACGUCC ...........((((...((((((....)))))).((....)).....)))).. ( -10.50, z-score = -0.21, R) >droSim1.chr3L_random 927394 54 - 1049610 AUCUUAACAACACGUAUAGCCUAGUUUUCUGGGUGAGAAUUCGGCCAGACGUCC ...........((((...(((.(((((((.....))))))).)))...)))).. ( -14.30, z-score = -1.83, R) >consensus AUCUUAACAACACGUAUAGCCUAGUUUUCUGGGUGAGAAUUCGGCCAGACGUCC ...........((((...(((.(((((((.....))))))).)))...)))).. (-12.30 = -12.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:16 2011