| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,902,148 – 21,902,235 |
| Length | 87 |
| Max. P | 0.588235 |
| Location | 21,902,148 – 21,902,235 |
|---|---|
| Length | 87 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 68.64 |
| Shannon entropy | 0.63637 |
| G+C content | 0.30741 |
| Mean single sequence MFE | -20.56 |
| Consensus MFE | -3.90 |
| Energy contribution | -4.43 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588235 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 21902148 87 - 24543557 ----------------------UUUCUGGAUUGUUGUUGGCGGCUAAUGUUGU-UGAAUAAUAGUUUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCAGCCAUUUA ----------------------.....((((((((((..(((((....)))))-..).)))))))))..((((((((((...((((....))))....)))))))))).. ( -24.80, z-score = -3.71, R) >droSim1.chr3L 21241153 87 - 22553184 ----------------------UUUCUGGAUUGUUGUUGGCGGCUAAUGUCGU-UGAAUAAUAGUUUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCAGCUAUUUA ----------------------.....((((((((((..(((((....)))))-..).)))))))))..((((((((((...((((....))))....)))))))))).. ( -24.50, z-score = -3.87, R) >droSec1.super_11 1829914 87 - 2888827 ----------------------UUUCUGGAUUGUUGUUGGCGGCUAAUGUCGU-UGAAUAAUAGUUUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCAGCUAUUUA ----------------------.....((((((((((..(((((....)))))-..).)))))))))..((((((((((...((((....))))....)))))))))).. ( -24.50, z-score = -3.87, R) >droYak2.chr3L 22217024 87 - 24197627 ----------------------UCUCUGGAUUGUUGUUGGCUACUAAUGUGGU-UGAACAAUAGUUUUUAAUGGCUGUUGGCUGUUAUUAAAUAAAUAAGCAGCUAUUUA ----------------------.....((((((((((..(((((....)))))-..).)))))))))..((((((((((...((((....))))....)))))))))).. ( -25.30, z-score = -3.78, R) >droEre2.scaffold_4784 21577478 87 - 25762168 ----------------------UCUCGGGAUUGUUGCUGGCUACUAAUGUCGU-UGAAUAAUAGUUUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCAGCUAUUUA ----------------------.....((((.(((((((((.......)))((-(.((((((((((..((.....))..)))))))))).))).....)))))).)))). ( -19.20, z-score = -1.68, R) >droAna3.scaffold_13337 21031460 66 - 23293914 ------------------------------------------GCUAAUGCCGU-UGAAUAAUAG-UUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCAGCUAUUUA ------------------------------------------......(((((-((((......-.))))))))).((((..((((........))))..))))...... ( -14.00, z-score = -1.13, R) >dp4.chrXR_group6 8112563 81 + 13314419 ---------------------UUUUCAGUAUUGUUUUUG-------UUGCUGC-UGAAUAAUAGUUUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCAGCUAUUUA ---------------------..................-------..(((((-(.((((((((((..((.....))..)))))))))).........))))))...... ( -16.90, z-score = -1.33, R) >droWil1.scaffold_180949 1930681 70 - 6375548 ---------------------------------------GUGGCUAAUGUUGU-UGAAUAAUAGUUUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCUGCUAUUUA ---------------------------------------(..(((....((((-(.((((((((((..((.....))..)))))))))).)))))...)))..)...... ( -17.90, z-score = -3.48, R) >droVir3.scaffold_13049 12946637 97 + 25233164 -----------UUCGAAGCUGAUUUGUGUUUAGUUACUG-UAGCUAAUGUCGU-UGAAUAAUUGUUGUUAAUGACUGUUGAGUGUGAUUAAAUAAAUAAGCUGAUAUUUA -----------.....((((......(((((((((((..-((((....(((((-(((..........)))))))).))))...)))))))))))....))))........ ( -22.80, z-score = -3.17, R) >droMoj3.scaffold_6680 15203844 106 - 24764193 UUCAACCGCUUCCUCUCCUAGCCCCCCACAUGGACUGUAG---CUAAUGUCAC-UGCAUAAUUGUUUUUGAAGUUUGUUGACUGUUAUCAAAUAAAUAAGCUGAUAUUUA .(((((.(((((......((((..(((....))...)..)---)))((((...-.))))..........)))))..)))))....(((((...........))))).... ( -14.10, z-score = 0.35, R) >droGri2.scaffold_15110 1717961 90 + 24565398 -------------UUGAAUGCUGUCUCUUUUUACCCAUUGCAGCUAAUUCUGCGCAAAUAGUUGUUUUAAG-------CAACUAUGCUUAAAUAAAUAAGCAGGUAUUUA -------------.((((((((...............((((.((.......))))))((((((((.....)-------)))))))(((((......))))).)))))))) ( -22.20, z-score = -2.10, R) >consensus ______________________UUUCUGGAUUGUUGUUGGCGGCUAAUGUCGU_UGAAUAAUAGUUUUUAAUGGCUGUUGACUGUUAUUAAAUAAAUAAGCAGCUAUUUA ..................................................................(((((((((........)))))))))((((((......)))))) ( -3.90 = -4.43 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:15 2011