Locus 831

Sequence ID dm3.chr2L
Location 6,077,105 – 6,077,203
Length 98
Max. P 0.732464
window1127

overview

Window 7

Location 6,077,105 – 6,077,203
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 97.28
Shannon entropy 0.03748
G+C content 0.52041
Mean single sequence MFE -34.23
Consensus MFE -33.23
Energy contribution -33.57
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.732464
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 6077105 98 - 23011544
UUGGGGGUUGGUUUUAGAUCUCGAGGAUUUUCCUGCGGCUUCUGCGUCUUGGGUAAUUGGGCAAAGCCAGCUUUGCUUUUCCUUGGGUCAACGACCCC
...(((((((....((((..((((((.....))).)))..)))).(.((..((.....((((((((....))))))))...))..)).)..))))))) ( -36.00, z-score =  -1.62, R)
>droSec1.super_5 4147846 98 - 5866729
GUGGGGGUUGGUUUUAGAUCUCGAAGAUUUUCCUGCGGCUUCUGCGUCUUGGGUUAUUGGGCAAAGCCAUCUUUGCUUUUCCUUGGGUCAACGACCCC
...(((((((....((((..(((.((......)).)))..)))).(.((..((.....((((((((....))))))))...))..)).)..))))))) ( -30.70, z-score =  -0.65, R)
>droSim1.chr2L 5865387 98 - 22036055
GUGGGGGUUGGUUUUAGAUCUCGAGGAUUUUCCUGCGGCUUCUGCGUCUUGGGUUAUUGGGCAAAGCCAGCUUUGCUUUUCCUUGGGUCAACGACCCC
...(((((((....((((..((((((.....))).)))..)))).(.((..((.....((((((((....))))))))...))..)).)..))))))) ( -36.00, z-score =  -1.59, R)
>consensus
GUGGGGGUUGGUUUUAGAUCUCGAGGAUUUUCCUGCGGCUUCUGCGUCUUGGGUUAUUGGGCAAAGCCAGCUUUGCUUUUCCUUGGGUCAACGACCCC
...(((((((....((((..((((((.....))).)))..)))).(.((..((.....((((((((....))))))))...))..)).)..))))))) (-33.23 = -33.57 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:22 2011