Locus 8309

Sequence ID	dm3.chr3L
Location	21,890,017 – 21,890,107
Length	90
Max. P	0.731914

overview

Window 6

Location	21,890,017 – 21,890,107
Length	90
Sequences	3
Columns	91
Reading direction	reverse
Mean pairwise identity	86.67
Shannon entropy	0.18164
G+C content	0.31566
Mean single sequence MFE	-14.73
Consensus MFE	-12.29
Energy contribution	-12.40
Covariance contribution	0.11
Combinations/Pair	1.04
Mean z-score	-1.71
Structure conservation index	0.83
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.53
SVM RNA-class probability	0.731914
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21890017 90 - 24543557
UACUAGCUUGGAUUAUUGCAUUGAACC-ACUUAUAGACCAAUUAUAGACACGUUCAGAGUUGCUCGGAAGAAACUAGAAAUAAUUUCAAAA
.......((((((((((.(.((((((.-..((((((.....))))))....))))))((((..((....)))))).).))))).))))).. ( -12.40, z-score =  -0.21, R)
>droSec1.super_11 1817651 88 - 2888827
---UACAAAGGAUCAUUGCAUUGAACCAAUUUAUAGACAAUUUAUACACGCGUUCAGCGUUGGUCAUAAGAAACUAGAAAUAAUUUCAAAA
---.......(((((.(((..(((((.....((((((...)))))).....)))))))).)))))....((((.((....)).)))).... ( -15.90, z-score =  -2.46, R)
>droSim1.chr3L 21228866 88 - 22553184
---UACAAAGGAUCAUUGCAUUGAACCAAUUUAUAGACAAUUUAUACACGCGUUCAGCGUUGGUCAUAAGAAACUAGAAAUAAUUUCAAAA
---.......(((((.(((..(((((.....((((((...)))))).....)))))))).)))))....((((.((....)).)))).... ( -15.90, z-score =  -2.46, R)
>consensus
___UACAAAGGAUCAUUGCAUUGAACCAAUUUAUAGACAAUUUAUACACGCGUUCAGCGUUGGUCAUAAGAAACUAGAAAUAAUUUCAAAA
..........(((((..((.((((((.....(((((.....))))).....)))))).)))))))....((((.((....)).)))).... (-12.29 = -12.40 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:14 2011