| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,872,444 – 21,872,558 |
| Length | 114 |
| Max. P | 0.652409 |
| Location | 21,872,444 – 21,872,558 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.91 |
| Shannon entropy | 0.35324 |
| G+C content | 0.57671 |
| Mean single sequence MFE | -45.28 |
| Consensus MFE | -28.78 |
| Energy contribution | -31.10 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21872444 114 + 24543557 ----CUCGAGUG-AGCCAACUCUGUGGUCCACUCAACUCAAUCAGUUUCUGGUGCGAGUGAGAUGACCAUAGUGGCGUGGGCGCCUUGAGUGGCUAUCGUGCUGCGGUGUGACCACGCG ----...((((.-.....))))(((((((..((((.(((.(((((...)))))..)))))))..)))))))...(((((((((((....(..((......))..))))))..)))))). ( -46.80, z-score = -1.93, R) >droEre2.scaffold_4784 21548437 104 + 25762168 ----UUCGAGUG-GGUCAACUCAA----------AACUCACUCAGUUGCAGGUGCGAGUGGGAUGACCAUAGUGUCGCUGGCUCUUUGAGUGGCGCCCAAGACACGGUGUGACCGCGCG ----.....(((-(((((......----------...(((((((.((((....)))).)))).))).(((.(((((...(((.((......)).)))...))))).)))))))).))). ( -38.10, z-score = -0.64, R) >droYak2.chr3L 22153945 119 + 24197627 CACGAGUGAGUCAACUCAAUUCUUUGGUCCACUCAACUCACUCAGUUGUUGGUGCGAGCGGGACGACCAUAGUGGCGGUGGCGCUUCGAGUGGCACCCAUGCUACGGUGUGACCACGCG ..((.(((.((((..........(((..((.(((.(((.((......)).)))..))).))..))).(((.(((((((((.(((.....))).))))...))))).)))))))))).)) ( -40.50, z-score = 0.25, R) >droSec1.super_11 1799699 115 + 2888827 ----CUCGAGCGGAGUCAACUCUGUGGUCCACUCAACUCAAUCAGUUACUGGUGCGAGUGAGAUGACCAUAGUGGCGUGGGCGCCUUGAGUAGCUACCAUGCUGCGGUGUGACCACGCG ----(((.....)))....(.((((((((..((((.(((.(((((...)))))..)))))))..)))))))).)(((((((((((....(((((......))))))))))..)))))). ( -48.70, z-score = -2.44, R) >droSim1.chr3L 21211404 115 + 22553184 ----CUCGAGUGGAGUCAACGCUGUGGUCCACUCAACUCAAUCAGUUACUGGUGCGAGUGAGAUGACCAUAGUGGCGUGGGCGCCUUGAGUAGCUACCAUGCUGCGGUGUGACCACGCG ----(((.....)))....((((((((((..((((.(((.(((((...)))))..)))))))..))))))))))(((((((((((....(((((......))))))))))..)))))). ( -52.30, z-score = -3.36, R) >consensus ____CUCGAGUG_AGUCAACUCUGUGGUCCACUCAACUCAAUCAGUUACUGGUGCGAGUGAGAUGACCAUAGUGGCGUGGGCGCCUUGAGUGGCUACCAUGCUGCGGUGUGACCACGCG ...................(.((((((((..((((.(((.(((((...)))))..)))))))..)))))))).)(((((((((((....(((((......))))))))))..)))))). (-28.78 = -31.10 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:12 2011