| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,870,164 – 21,870,258 |
| Length | 94 |
| Max. P | 0.671747 |
| Location | 21,870,164 – 21,870,258 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.14 |
| Shannon entropy | 0.54274 |
| G+C content | 0.46700 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -16.20 |
| Energy contribution | -17.98 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21870164 94 - 24543557 -------AAAAAGGGGGCAAAACUGCAUGGACUUUGGCAGUGCAUUCGAAUGGCAGCCCAACUUCCGUUUGA--AGCCUUUGUCCGUGUGAGUUGU------GUAAAAG -------.........(((.((((((((((((...(((......(((((((((.((.....)).))))))))--))))...)))))))).)))).)------))..... ( -31.90, z-score = -2.02, R) >droSim1.chr3L 21209018 100 - 22553184 -AAAAAAAAAAAGAGGUCAAAACUGCAUGGACUUUGGCCGUGCAUUCGAAUGGCAGCCCAACUUCCGUUUGA--AGCCUUUGUCCGUGUGGGUUGU------GUAAAAG -.....................(..(((((((...(((......(((((((((.((.....)).))))))))--))))...)))))))..).....------....... ( -29.70, z-score = -1.88, R) >droSec1.super_11 1792204 100 - 2888827 -AAAAUAAAAAAGAGGUCAAAACUGCAUGGACUUUGGCCGUGCAUUCGAAUGGCAGCCCAACUUCCGUUUGA--AGCCUUUGUCCGUGUGGGUUGU------GUAAAAG -.....................(..(((((((...(((......(((((((((.((.....)).))))))))--))))...)))))))..).....------....... ( -29.70, z-score = -1.89, R) >droYak2.chr3L 22147475 93 - 24197627 -------AAAAAUUGGGGAAAGCUGCACGGACUCCGACAGUGCAUUC-AAUGGCAGCCCAUCUUCCGUUUGA--AGCCUUUGCCCGUGUGGGUUGU------GCAAAAA -------.....(((.(.((..(..(((((....(((.((.((.(((-(((((.((.....)).))).))))--)))))))).)))))..).)).)------.)))... ( -23.00, z-score = 1.35, R) >droEre2.scaffold_4784 21546989 93 - 25762168 -------AAAAAAAGGGAAAAACUGCA-GCCCUUUGGUAGUGCAUUCGAAUGGCAGCCCAUCUUCCGUUUGA--AUCCUUUGUCCGUGUGGGUUGU------GUAAAAA -------.................(((-((((..((((((.(.((((((((((.((.....)).))))))))--)).).))).)))...)))))))------....... ( -25.90, z-score = -1.69, R) >droAna3.scaffold_13337 21002176 109 - 23293914 AAAAUAAAUAAACGAGCUCUGGUCAGAGGGGGCGUGGCAAUCCAUUCAAAUGUGGCGUUCUUUGCGACCCGGCUGGCUUUCCUUUGAGUCCUUUGUCAGUGGGUAAAAA ...............((((.((((..(((((((((.(((...........))).)))))))))..)))).(((.(((((......))).))...)))...))))..... ( -27.90, z-score = 0.65, R) >consensus _______AAAAAGAGGGCAAAACUGCAUGGACUUUGGCAGUGCAUUCGAAUGGCAGCCCAACUUCCGUUUGA__AGCCUUUGUCCGUGUGGGUUGU______GUAAAAA ......................((((((((((...(((.......((((((((.((.....)).))))))))...)))...)))))))))).................. (-16.20 = -17.98 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:11 2011