| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,865,914 – 21,866,019 |
| Length | 105 |
| Max. P | 0.611017 |
| Location | 21,865,914 – 21,866,019 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.69 |
| Shannon entropy | 0.40994 |
| G+C content | 0.53482 |
| Mean single sequence MFE | -34.15 |
| Consensus MFE | -16.90 |
| Energy contribution | -18.27 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21865914 105 + 24543557 GAGAUUGCAGAUGAAUGUCU------GGCCAGU-CCCGGGUAUCCUGGCAGGCGGUAUGGUAUCCUGCAAAGCCUAUGGAAGGCCUUACUCCUUAGUCU--------GAACCCAAUCUCG ((((((((((((....((..------((((...-.(((((...))))).((((.(((.((...)))))...))))......))))..))......))))--------)....))))))). ( -36.60, z-score = -1.46, R) >droSim1.chr3L 21204709 98 + 22553184 GAGAUUGCAGAUGAAAGUCU------GGCCAGU-CCCGGGUAUCCUGGCAGGCG-----GUAUCCUGCAAAGCCGAUGGAAGGC--UACUCCUUACUCC--------GAACCCAAUCUCG ((((((((((((....))))------)......-..((((((.....(((((..-----....)))))..((((.......)))--)......))).))--------)....))))))). ( -34.60, z-score = -1.66, R) >droSec1.super_11 1787970 98 + 2888827 GAGAUUGCAGAUGAAAGUCU------GGCCAGU-CCCGGGUAUCCUGGCAGGCG-----GUAUCCUGCAAAGCCGAUGGAAGGC--UACUCCUUACUCC--------GAACCCAAUCUCG ((((((((((((....))))------)......-..((((((.....(((((..-----....)))))..((((.......)))--)......))).))--------)....))))))). ( -34.60, z-score = -1.66, R) >droEre2.scaffold_4784 21542660 104 + 25762168 GAGAUUGCAGAUGGAAGUCU------GGCCAGU-CCCGGGCAUCCUGGCAGGCGG---------AUGCAAAUCCGAUGGAAGGCCUUACUCCUUACGCCUUACUCCAAAACCCAAUCUCG ((((((((....(((.((((------((.....-.)))))).)))..)).(((((---------((....))))).((((((((............))))...))))....)))))))). ( -35.90, z-score = -1.61, R) >droAna3.scaffold_13337 20995366 100 + 23293914 GAGAUUGCAGAUGAAAGUCCCUCAUGAACUCGUAUUUGAGCUUCCUCGCAGGAAG---------AUGCAGAGCCGAUGAAAGGUUUUCGACCAGACCC-----------AUCCAAUUUCG (((((((..((((...(((..........(((..((((..(((((.....)))))---------...))))..))).....((((...)))).))).)-----------)))))))))). ( -26.70, z-score = -1.55, R) >droYak2.chr3L 22143698 97 + 24197627 GAGAUUGCAGAUGAAAGUCU------GGCCAGU-CCCGGAUGCUCUGGCAGGAGG---------AUGCAAAGCCGAUGUAAGGCUUUACUCCUUACUCC-------AAAACCCAAUCUCG ((((((((((((....))))------)(((((.-.(.....)..)))))..((((---------(.(.((((((.......)))))).)))))).....-------......))))))). ( -36.50, z-score = -3.34, R) >consensus GAGAUUGCAGAUGAAAGUCU______GGCCAGU_CCCGGGUAUCCUGGCAGGCGG_________AUGCAAAGCCGAUGGAAGGC_UUACUCCUUACUCC________GAACCCAAUCUCG ((((((((((((....)))........(((.....(((((...)))))..)))............)))...(((.......))).............................)))))). (-16.90 = -18.27 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:10 2011