| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,852,692 – 21,852,793 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 21,852,692 – 21,852,793 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.10 |
| Shannon entropy | 0.41985 |
| G+C content | 0.45829 |
| Mean single sequence MFE | -32.84 |
| Consensus MFE | -14.10 |
| Energy contribution | -15.07 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 21852692 101 - 24543557 GGCCAUCUCUGUCUCUCCUGUCUCAUUUGCUUUCAAUUUUUAUUUGCCGUGUUACA--ACCAACACUGAGAGCG---------GAGAAAGGCAGAAAGGGAGAGCGAGGAAA ..((.((.((.(((((.((((((..((((((((((.............(((((...--...)))))))))))))---------))...))))))..))))).)).))))... ( -32.21, z-score = -1.61, R) >droSim1.chr3L 21191196 112 - 22553184 GGCCAUCUCUGUCUCUCCUGUCUCAUUUGCUUUCAAUUUUUAUUUGCCGUGUUACAACACCAACACGGAGAACGGAGAACGGAGAGAAAGGCAGAAAGGGAGAGCGAGGAAA ..((.((.((.(((((.((((((......(((((..((((..((..(((((((........)))))))..))..))))...)))))..))))))..))))).)).))))... ( -36.20, z-score = -1.98, R) >droSec1.super_11 1773896 101 - 2888827 GGCCAUCUCUGUCUCUCCUGUCUCAUUUGCUUUCAAUUUUUAUUUGCCGUGUUACA--ACCAACACGGAGAACG---------GAGAAAGGCAGAAAGAGAGAGCGAGGAAA ...........((.(((((.((((.((((((((...((((..((..(((((((...--...)))))))..))..---------))))))))))))..)))).)).))))).. ( -32.10, z-score = -2.12, R) >droYak2.chr3L 22127158 97 - 24197627 GGCCGUCUCUGUCUCUCCUGUCUCAUUUGCUUUCAAUUUUUAUUUGCCGUGUUACA--UCCAACACACAGAAUG---------GAGCAAUGCAGA----GACAGCGAGAAAA (((.......)))(((((((((((..((((((........(((((...(((((...--...)))))...)))))---------))))))....))----))))).))))... ( -26.30, z-score = -1.95, R) >droEre2.scaffold_4784 21528537 104 - 25762168 GGCUGUCUCUGUCUCUCCUGUCUCAUUUGCUUUCAAUUUUUAUUUGCCGUGUUACA--ACCAACACGGAGAACGGAG------AACGGAGAAAGGCAGAGAGAGCGAGAAAA .(((.(((((((((((((..((((.........(((.......)))(((((((...--...)))))))......)))------)..)))))..)))))))).)))....... ( -39.80, z-score = -3.74, R) >droAna3.scaffold_13337 20979624 101 - 23293914 GUCCAUGUCCUUCUCUGCUGUCUCAUUUGGUUUCCAUUUUUAUUUGCCGUGUUACA--ACCAACACGGAGAAUG---------GAGAACGAGGAACUUGGAGGGUGGCUGGA .((((.(((.((((((...((.((.((((.((((((((((......(((((((...--...)))))))))))))---------)))).))))))))..)))))).))))))) ( -33.90, z-score = -1.88, R) >dp4.chrXR_group6 8059155 106 + 13314419 GUCCAUGUCUGUCUCUCCUGUCUCAUUUGCUUUCAAUUUUUAUUUGCCGUGUUACAAGCAGAGAAUGAAGAGCAGAG-----AAUGAAGAGCAGAGAG-CAGAGCAGAGAGA .((..((((((.(((((.(((((((((((((((((.(((((.((((........)))).))))).)).))))))...-----)))).))).)))))))-)))).))..)).. ( -29.40, z-score = -0.66, R) >consensus GGCCAUCUCUGUCUCUCCUGUCUCAUUUGCUUUCAAUUUUUAUUUGCCGUGUUACA__ACCAACACGGAGAACG_________GAGAAAGGCAGAAAGGGAGAGCGAGGAAA .....((((..((((((((((((...(((....)))......(((.(((((((........))))))).)))................))))))...))))))..))))... (-14.10 = -15.07 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:09 2011