| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,846,415 – 21,846,514 |
| Length | 99 |
| Max. P | 0.987963 |
| Location | 21,846,415 – 21,846,514 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.97 |
| Shannon entropy | 0.37492 |
| G+C content | 0.43035 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -15.83 |
| Energy contribution | -17.18 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.987963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21846415 99 + 24543557 GCCAUGUAAAUGGCACGGGAAAAUUGCUGAGGAGAAAAUAAGCGAAAAAUAAAAGCUGAGAAAUCUCGGCUAUAAAUACACGACGUCAGCGAACGGCGA- (((((....))))).........(((((((.(.(........)..........(((((((....)))))))............).))))))).......- ( -26.80, z-score = -3.12, R) >droSim1.chr3L 21184474 99 + 22553184 GCCAUGUAAAUGGCACGGGAAAAUUGCUGAGAAGAAAAUAAGCGAAAAAUAAAAGCUGAGAAAUCUCGGCUAUAAAUACACGACGUCAGCGAACGGCGA- (((((....))))).((......(((((............)))))........(((((((....))))))).........)).((((.......)))).- ( -26.20, z-score = -3.09, R) >droSec1.super_11 1767848 99 + 2888827 GCCAUGUAAAUGGCACGGGAAAAUUGCUGAAAAGAAAAUAAGCGAAAAAUAAAAGCUGAGAAAUCUCGGCUAUAAAUACACGACAUCAGCGAACGGCGA- (((((....))))).........(((((((...(........)..........(((((((....)))))))..............))))))).......- ( -24.80, z-score = -3.30, R) >droYak2.chr3L 22113328 99 + 24197627 CCCAUGUAAAUGGCACGGGAAAAUUGCUGAGAAGAAAAUAAGCGAAAAAUAAAAGCUGAGAAAUCUCAGCUAUAAAUACACGACGUCAGCGAACGGCGA- (((.(((.....))).)))....(((((............)))))........(((((((....)))))))............((((.......)))).- ( -24.50, z-score = -3.01, R) >droVir3.scaffold_13049 12882223 80 - 25233164 ------------GCAUUGUAAG--UGCUGCAGCAACUGCA---GCAAAAUAGAGGC--AAAAAGUGCAGCUAAAUUUAGACAACGUCAGCGG-CGUCGAG ------------..........--((((((((...)))))---)))...(((..((--(.....)))..)))......(((..((....)).-.)))... ( -22.40, z-score = -0.67, R) >consensus GCCAUGUAAAUGGCACGGGAAAAUUGCUGAGAAGAAAAUAAGCGAAAAAUAAAAGCUGAGAAAUCUCGGCUAUAAAUACACGACGUCAGCGAACGGCGA_ (((((....))))).........(((((((...(........)..........(((((((....)))))))..............)))))))........ (-15.83 = -17.18 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:06 2011