| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,844,771 – 21,844,867 |
| Length | 96 |
| Max. P | 0.970683 |
| Location | 21,844,771 – 21,844,867 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 57.99 |
| Shannon entropy | 0.73096 |
| G+C content | 0.40810 |
| Mean single sequence MFE | -22.38 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.20 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21844771 96 - 24543557 UAUAGGACUCCUCCAAGCCACGAGGAGUUAUAG-----AGAAUUCUGUUGUAAAAAAGGAGAUAUAUCCUAAAGAAUUUCAUUUUCCCCUUUGAUUUUUUA .....((((((((........)))))))).(((-----((((((............((((......))))...(((.......)))......))))))))) ( -18.60, z-score = -0.57, R) >droWil1.scaffold_180949 2023652 90 - 6375548 UGUGAGAAUUGCGAAAGUGAGUGACAGUUAUA------GAAGU--UGUGGCUACUUAUGC-AUGUGUUUUAGCCAAUAAGCAAACCAUUUGGCUUGACA-- .........((((.((((.(((.(((..(...------..)..--))).))))))).)))-)..((((..((((((............)))))).))))-- ( -21.30, z-score = -0.72, R) >droSim1.chr3L 21182876 83 - 22553184 UAUGGGACUCCUCCAAGCCACGAGGAGUUAUAG-----AGAAUCCUGUUGUAAAAGAGGCGAUAGAUCCUGGAUAGUUUGCGUAUCUA------------- ...((((((((((........))))))))....-----......(((((((.......)))))))..))(((((((....).))))))------------- ( -21.20, z-score = -0.65, R) >droSec1.super_11 1766259 83 - 2888827 UAAUGGACUCCUCCAAGCCACGAGGAGUUAUAG-----AGAAUCCUGUUGUAAAAGAGGCGAUAGAUCCUGGAUAGUUUGCGUAUCUA------------- .....((((((((........))))))))....-----......(((((((.......)))))))....(((((((....).))))))------------- ( -19.90, z-score = -0.68, R) >droEre2.scaffold_4784 21519905 98 - 25762168 UAUAGGACUUCUCCAAGCCAGGAGGAGUAAUAGCAGGAGCAAUCCUGUUACCAUAG-GGCGACAGAUCCUGGGGAAUUUGUUUGAGACUUUGAUUUUUA-- ....((((((((((......))))))))..((((((((....)))))))))).(((-((((((((((((...)).)))))))...).))))).......-- ( -30.90, z-score = -2.07, R) >consensus UAUAGGACUCCUCCAAGCCACGAGGAGUUAUAG_____AGAAUCCUGUUGUAAAAGAGGCGAUAGAUCCUGGAGAAUUUGCGUAUCAA_U____U______ ..(((((((((((........)))))).................(((((((.......))))))).))))).............................. (-12.32 = -12.20 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:06 2011