| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,841,601 – 21,841,705 |
| Length | 104 |
| Max. P | 0.703043 |
| Location | 21,841,601 – 21,841,705 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 64.10 |
| Shannon entropy | 0.65281 |
| G+C content | 0.66007 |
| Mean single sequence MFE | -32.78 |
| Consensus MFE | -12.61 |
| Energy contribution | -14.40 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21841601 104 + 24543557 CCCAGGCUCCGAGC-CCUCGGAUCCG--CGAGUCCCCGACUUC--CAGCCCCCAUGUCCCCGGAUCCGAUCCACCCAUCCAGCACCACUUCUC-GGGGAGUAUCCGGAGC .....((((((...-..(((((((((--.(((((...))))).--((.......))....))))))))).................(((((..-..)))))...)))))) ( -30.60, z-score = 0.11, R) >droSim1.chr3L 21179739 97 + 22553184 UCCAAGCUCCGAGC-CCCCGGAUCCG--CGAGUCCCCGACUUG--CAGCCCCCAAGUCCCCGGAUGC--------UAUCCAGCACCACCCCUUUGGGGAGCAUCCGGGGC .....((.....))-((((((((..(--((((((...))))))--).(((((((((.....((.(((--------(....)))))).....))))))).)))))))))). ( -43.80, z-score = -3.92, R) >droSec1.super_11 1763134 97 + 2888827 CGCAAGCUCCGAGC-CCCCGGAUCCG--CGAGUCCCCGACUUG--CAGCCCCCAAGUCCCCGGAUGC--------UAUCCAGCACCACCCCUUUGGGGAGCAUCCGGGGC .....((.....))-((((((((..(--((((((...))))))--).(((((((((.....((.(((--------(....)))))).....))))))).)))))))))). ( -43.80, z-score = -3.50, R) >droYak2.chr3L 22108550 98 + 24197627 CCAAUGCUCCGAGUUCCCCGGAUCCG--CGAGUUCCCGACUUG--CAGCCCCCAGGUCCCCAGAUCC--------GAUUCAGCAAACCCCCUUUGUGGAGCAUCCGGGGC .....((((((.(((((.((((((.(--((((((...))))))--).(((....))).....)))))--------).....(((((.....))))))))))...)))))) ( -34.50, z-score = -2.31, R) >droAna3.scaffold_13337 20966917 91 + 23293914 UCCAACCUUCAA---CCGCGAAAUCC--CAAGCCCCCUGC-----CAGCCUCCAGCCUCCAGUCUCC--------AGCCCAGC-CAACCCGAUUGGGGAGCAUCCAUGGC ............---..((.......--...)).....((-----((.......((((((((((...--------........-......)))))))).)).....)))) ( -16.33, z-score = 1.03, R) >droPer1.super_9 61440 104 - 3637205 CCCAGACCCCAGCC-CCUGGGAUGGGGCUGAACUAUUCGCCCACACAACUGUCGUUCCUUCCGCACCCAA-----ACCCAAACGCCAUCACUUUGGGGAGCAUCCGUGUC ..(((.(((((.((-....)).))))))))............(((((((....)))......((.(((((-----(...............))))))..))....)))). ( -27.66, z-score = 0.30, R) >consensus CCCAAGCUCCGAGC_CCCCGGAUCCG__CGAGUCCCCGACUUG__CAGCCCCCAAGUCCCCGGAUCC________AAUCCAGCACCACCCCUUUGGGGAGCAUCCGGGGC ...............((((((((.....(((((.....)))))....(((((((((...................................))))))).)))))))))). (-12.61 = -14.40 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:05 2011