| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,056,511 – 6,056,562 |
| Length | 51 |
| Max. P | 0.822537 |
| Location | 6,056,511 – 6,056,562 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 72.84 |
| Shannon entropy | 0.47583 |
| G+C content | 0.55830 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -9.43 |
| Energy contribution | -10.65 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6056511 51 + 23011544 ---------GGCGAGCACAGAAACAGCGUCUCUGAUUCUGGCAGGAAUUGGAGGGCAUAG ---------................((.((((..(((((....)))))..)))))).... ( -14.80, z-score = -1.55, R) >droSim1.chr2L 5845284 51 + 22036055 ---------GGCGAGCACAGAAACAGCGUCUCUGAUUCUGGCAGGAAUUGGAGGGCAUAG ---------................((.((((..(((((....)))))..)))))).... ( -14.80, z-score = -1.55, R) >droSec1.super_5 4127386 51 + 5866729 ---------GGCGAGCACAGAAACAGCAUCUCUGAUUCUAGCAGGAAUUGGAGGGCAUAG ---------................((.((((..(((((....)))))..)))))).... ( -14.50, z-score = -2.23, R) >droYak2.chr2L 9188629 51 - 22324452 ---------GGCGAGAACAGAAACAGCGUCUCUGAUUCUGGCCGGAAUAGGAGGGCAGAG ---------(((.((((((((.((...)).)))).)))).)))................. ( -14.60, z-score = -1.17, R) >droEre2.scaffold_4929 15576523 60 - 26641161 GGCGAAGUAGCCAGAAACAGAAACAGCGUCUCUGAUUCUGGCAGGAAUUGGAGGGCAGAG (((......))).............((.((((..(((((....)))))..)))))).... ( -20.00, z-score = -2.58, R) >droVir3.scaffold_12963 3955714 50 + 20206255 ---------GGCUGGCGCUUAAACGCCCGCACAGCAGCCGGCAUGGGUUUGAAGGUGAC- ---------.((.((((......)))).))......(((..((......))..)))...- ( -14.10, z-score = 0.99, R) >consensus _________GGCGAGCACAGAAACAGCGUCUCUGAUUCUGGCAGGAAUUGGAGGGCAUAG .........................((.(((((((((((....))))))))))))).... ( -9.43 = -10.65 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:21 2011