| Sequence ID | dm3.chr2L |
|---|---|
| Location | 613,505 – 613,599 |
| Length | 94 |
| Max. P | 0.967495 |
| Location | 613,505 – 613,599 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 88.21 |
| Shannon entropy | 0.20801 |
| G+C content | 0.42456 |
| Mean single sequence MFE | -18.74 |
| Consensus MFE | -13.92 |
| Energy contribution | -14.64 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 613505 94 + 23011544 GUCGAAGAAUCCAUCCAAAGUAAUUUCAAUUAAAAAGAAAGCCUGCCACCCACCAACAUGUGGCACCAGAAGGAAACAACCUCCAACUUUAAAU ................(((((......................((((((..........))))))......(((.......))).))))).... ( -12.20, z-score = -0.84, R) >droSim1.chr2L 619803 93 + 22036055 GUCCAAGAAUGCACUCAAAGCCAUUUCAAUUAAAAAGAAAGGCUGCCACCCACCAACAGGUGGCACCAAAAGGAAACAACCCCCAACUUUAGA- .(((..............((((.((((.........))))))))((((((........)))))).......)))...................- ( -21.80, z-score = -2.66, R) >droSec1.super_14 596113 93 + 2068291 GUCCAAGAAUCCAUUCAAAGCCAUUUCAAUUAAAAAGAAAGGCUGCCACCCACCAACAGGUGGCACCAAAAGGAAACAACCCCCAACUUUAGA- .........(((......((((.((((.........))))))))((((((........)))))).......)))...................- ( -21.90, z-score = -3.42, R) >droYak2.chr2L 603122 92 + 22324452 AUCCAGGAAUUCAUCUAAAGCCAUUUCAAUUAGAAAGAAAGUCUGCCACCCACCAACAGGUGGCAACACAAAGAAACAACAACCA-CUUUAGA- .............(((((((...((((.....))))....((.(((((((........)))))))))..................-)))))))- ( -19.50, z-score = -3.34, R) >droEre2.scaffold_4929 669672 92 + 26641161 AUCCAAGAAUCCAUCCAAAGCCAUUUCAAUUAAAAAGAAAGGCUGCCACCCACCAACAGGUGGCAACACACAGAAACAACAUCCA-CUUUAGA- ..................((((.((((.........))))))))((((((........)))))).....................-.......- ( -18.30, z-score = -3.46, R) >consensus GUCCAAGAAUCCAUCCAAAGCCAUUUCAAUUAAAAAGAAAGGCUGCCACCCACCAACAGGUGGCACCAAAAGGAAACAACCCCCAACUUUAGA_ .............(((..((((.((((.........))))))))((((((........)))))).......))).................... (-13.92 = -14.64 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:20 2011