| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,801,042 – 21,801,133 |
| Length | 91 |
| Max. P | 0.761136 |
| Location | 21,801,042 – 21,801,133 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.92 |
| Shannon entropy | 0.50924 |
| G+C content | 0.44366 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -11.27 |
| Energy contribution | -11.44 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21801042 91 - 24543557 AUUGAACUCGUAUUGGACGACUAAUGUGGCAAGGAGGUGGGCA--------CUUAAUGCCCGGCGAUCAGUGUAAA---CAAACAUUGGGAGAAACCAAGAA--------- ............((((.(..(((((((.(((..(((.((((((--------.....)))))).)..))..)))...---...)))))))..)...))))...--------- ( -24.30, z-score = -1.42, R) >droSim1.chr3L 21144225 91 - 22553184 UUUGAACUCGUAUUGGACGACUAAUGUGGCAAGGAGGUGGGCA--------CUUAAUGCCCGGCGAUCAGUGUAAA---UAAACAUUGGGAGAAACCAAGAA--------- ............((((.(..(((((((.(((..(((.((((((--------.....)))))).)..))..)))...---...)))))))..)...))))...--------- ( -24.30, z-score = -1.65, R) >droSec1.super_11 1718725 91 - 2888827 UUUGAACUCGUAUUGGACGACUAAUGUGGCAAGGAGGUGGGCA--------CUUAAUGCCCGGCGAUCAGUGUAAA---UAAACAUUGGGAGAAACCAAGAA--------- ............((((.(..(((((((.(((..(((.((((((--------.....)))))).)..))..)))...---...)))))))..)...))))...--------- ( -24.30, z-score = -1.65, R) >droYak2.chr3L 5503554 91 + 24197627 UUUGAACUCGUAUUGGACGACUAAUGUGGCAAGGAGGUGGGCA--------CUUAAUGCCCGGCGAUCAGUGUAAA---UAAACAUUGGGAGAUACCAAGAA--------- ............((((.(..(((((((.(((..(((.((((((--------.....)))))).)..))..)))...---...)))))))..)...))))...--------- ( -24.30, z-score = -1.58, R) >droEre2.scaffold_4784 21473087 91 - 25762168 UUUGAACUCGUAUUGGACGACUAAUGUGGCAAGGAGGUGGGCA--------CUUAAUGCCCGGCGAUCAGUGUAAA---UAAACAUUGGGAGAAACCAAGAA--------- ............((((.(..(((((((.(((..(((.((((((--------.....)))))).)..))..)))...---...)))))))..)...))))...--------- ( -24.30, z-score = -1.65, R) >droAna3.scaffold_13337 4111115 91 - 23293914 UUUGGACGCGCAUUGGACGACUAAUGUGGCAAGGAGGUGGGCA--------CUUAAUGCCCGGCGAUCAGUGUAAA---UAAACAUUGAGAGAAAUCCAGGA--------- ((((((.(((((((((....))))))).)).....(.((((((--------.....)))))).)..(((((((...---...)))))))......)))))).--------- ( -30.10, z-score = -3.06, R) >dp4.chrXR_group6 8910806 108 + 13314419 UUUGUAUUCGUAUUGGACAACUAAAGUGGCAAAGAGGUGGGCACAGAGUAUCGUAAUGCCCGCCGUUCAGUGUGAG---UAAAAACAGAGAGUAAGUAAACAAACUAAAGA ((((((((((((((((((.((....))........((((((((..(.....)....))))))))))))))))))))---)....)))))...................... ( -27.80, z-score = -2.44, R) >droPer1.super_9 939055 108 + 3637205 UUUGUAUUCGUAUUGGACAACUAAAGUGGCAAAGAGGUGGGCACAGAGUAUCGUAAUGCUCGCCGUUCAGUGUGAG---UAAAAACAGAGAGUAAGUAAACAAACUAAAGA ((((((((((((((((((.((....))........((((((((..(.....)....))))))))))))))))))))---)....)))))...................... ( -24.80, z-score = -1.48, R) >droWil1.scaffold_180698 5251355 92 - 11422946 ------UUUGUAUAUG-----UAAUGCGGCAAAGAGGUGGGCCUUAAAUA-CUAAACGCUUGCCGAACUGUGUAAAUAUUAAACAUUUCGUUUAUCCAAUUGUG------- ------..(((((...-----..)))))((((...((..(((.((.....-...)).)))..))(((.(((...........))).)))..........)))).------- ( -15.50, z-score = 0.54, R) >droVir3.scaffold_13049 1117398 85 + 25233164 UUUGUAUUCGUAUUGG---ACUAAUGUGGCAAAGAGGUGGGCA--------CUUAAUGCCCGCCGAGCUGUGUAAA---UAAAAGCGCGGAGAG--CGAAC---------- ......(((((.....---................((((((((--------.....))))))))...((((((...---.....))))))...)--)))).---------- ( -26.20, z-score = -1.87, R) >droMoj3.scaffold_6680 6026301 87 + 24764193 UUUGUAUUCGUAUUGG---ACUAAUGUGGCAAAGAGGUGGGCA--------CUUAAUGCCCGCCGAGCUGUGUAAA---UAAAAGCGCAGAGAGACCGAAC---------- ............((((---.((.............((((((((--------.....))))))))...((((((...---.....))))))..)).))))..---------- ( -26.40, z-score = -2.31, R) >droGri2.scaffold_15110 9602084 85 - 24565398 UUUGUAUUCGUAUUGG---ACUAAUGCACCAAAGAGGUGGGCA--------CUUAAUGCCCGCCGAGCUGUGUAAA---UAAAACCGCUGAGAG--CAAAC---------- (((((.(((((((((.---..))))))........((((((((--------.....)))))))).(((.((.....---....)).)))))).)--)))).---------- ( -25.30, z-score = -2.30, R) >consensus UUUGAACUCGUAUUGGACGACUAAUGUGGCAAAGAGGUGGGCA________CUUAAUGCCCGCCGAUCAGUGUAAA___UAAACAUUGGGAGAAACCAAGAA_________ ........((((((((....))))))))(((....(.((((((.............)))))).)......)))...................................... (-11.27 = -11.44 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:43:01 2011