| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,784,877 – 21,784,984 |
| Length | 107 |
| Max. P | 0.981460 |
| Location | 21,784,877 – 21,784,984 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 91.54 |
| Shannon entropy | 0.16684 |
| G+C content | 0.46940 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -21.00 |
| Energy contribution | -20.64 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.981460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21784877 107 + 24543557 CCACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGGAGCCGCCACUCGAUACAAAUCUAUUUUCGUUC--CCCGAC----------- ...................(((......(((((......(((((...((((...((((.((((..-...))))))))...)))).)))))......))))).--..))).----------- ( -19.30, z-score = -1.53, R) >droEre2.scaffold_4784 21457204 107 + 25762168 CCACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGGAGCCGCCAUUCGAUACAAAUCUAUUUUCGUUC--CCCGAC----------- ...................(((......(((((......(((((...((((...((((.((((..-...))))))))...)))).)))))......))))).--..))).----------- ( -19.30, z-score = -1.43, R) >droYak2.chr3L 5479906 107 - 24197627 CCACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUC--CCCGAC----------- ...................(((......(((((......(((((...((((...((((.(((((.-..)))))))))...)))).)))))......))))).--..))).----------- ( -19.50, z-score = -2.32, R) >droSec1.super_11 1702582 107 + 2888827 CCACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGGAGCCGCCACUCGAUACAAAUCUAUUUUUGUUC--CCCGAC----------- ...............................(((((((.(((((...((((...((((.((((..-...))))))))...)))).)))))....))))))).--......----------- ( -21.10, z-score = -2.12, R) >droSim1.chr3L 21128238 107 + 22553184 CCACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGGAGCCGCCACUCGAUACAAAUCUAUUUUCGUUC--CCCGAC----------- ...................(((......(((((......(((((...((((...((((.((((..-...))))))))...)))).)))))......))))).--..))).----------- ( -19.30, z-score = -1.53, R) >droWil1.scaffold_180698 5233611 120 + 11422946 AGACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAAGAGAAGCCGCCAUUCGAUACAAAUCUAUUUUCGUU-AGUUCGUUUUUUGUCCGAU ...............................(((((((...((((.....))))((((.(((((....)))))))))...(((.((.(((........)))-.)))))..))))))).... ( -24.00, z-score = -1.47, R) >droAna3.scaffold_13337 4097189 107 + 23293914 CCACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGGAGCCGCCACUCGAUACAAAUCUAUUUUCGUUC--CCCGAC----------- ...................(((......(((((......(((((...((((...((((.((((..-...))))))))...)))).)))))......))))).--..))).----------- ( -19.30, z-score = -1.53, R) >droPer1.super_9 920588 107 - 3637205 CUACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUC--CCCGGC----------- .....................(((....(((((......(((((...((((...((((.(((((.-..)))))))))...)))).)))))......))))).--...)))----------- ( -23.20, z-score = -2.72, R) >dp4.chrXR_group6 8892381 107 - 13314419 CUACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUC--CCCGGC----------- .....................(((....(((((......(((((...((((...((((.(((((.-..)))))))))...)))).)))))......))))).--...)))----------- ( -23.20, z-score = -2.72, R) >droVir3.scaffold_13049 1096183 104 - 25233164 -----CCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGAAGCCGCCUCUCGAUACAAAUCUAUUUUCGUUCGGUUCGGU----------- -----................(((..((...(((((((((((((...((((..(((((.(((((.-..))))))))))..)))).))))..)))))).)))..))..)))----------- ( -25.30, z-score = -2.38, R) >droMoj3.scaffold_6680 6007521 104 - 24764193 -----CCACUCCAUAAAUCUCACCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGAAGCCGCCUCUCGAUACAAAUCUAUUUUCGUUCGGUUCGGU----------- -----................(((..((...(((((((((((((...((((..(((((.(((((.-..))))))))))..)))).))))..)))))).)))..))..)))----------- ( -25.00, z-score = -2.91, R) >droGri2.scaffold_15110 9586900 104 + 24565398 -----CCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA-GAGAAGCCGCCUCUCGAUACAAAUCUAUUUUCGUUCGGUUCGGU----------- -----................(((..((...(((((((((((((...((((..(((((.(((((.-..))))))))))..)))).))))..)))))).)))..))..)))----------- ( -25.30, z-score = -2.38, R) >consensus CCACUCCACUCCAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCA_GAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUC__CCCGAC___________ ...................(((......(((((......(((((...((((...((((.(((((....)))))))))...)))).)))))......))))).....)))............ (-21.00 = -20.64 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:58 2011