| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,775,496 – 21,775,570 |
| Length | 74 |
| Max. P | 0.568450 |
| Location | 21,775,496 – 21,775,570 |
|---|---|
| Length | 74 |
| Sequences | 7 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 66.17 |
| Shannon entropy | 0.65588 |
| G+C content | 0.41889 |
| Mean single sequence MFE | -12.40 |
| Consensus MFE | -6.19 |
| Energy contribution | -6.21 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21775496 74 + 24543557 CGUUGCCAUACUUGAUUCGUAAUAAGCAAUCGAGAACCCCAAUCCGCAAUAAU--------UUGAUGCCCAACGGUAUCUGA .(((((....(((((((.((.....)))))))))...........)))))...--------..((((((....))))))... ( -14.06, z-score = -1.39, R) >droPer1.super_9 910617 81 - 3637205 CUUAGCCCCAUUGGAAAUUCAAAAAAAAACAGAGAAGCCUU-CCCGCAUUAGCCUUCUUUUUUGAAGCCUUGCGGUAUUUGA ....(((.((..((...(((((((.......((((((.((.-........)).))))))))))))).)).)).)))...... ( -15.41, z-score = -0.36, R) >droAna3.scaffold_13337 4088183 62 + 23293914 ---------CUCUAUUAUCUCAAGAAUCAUAGAAGACAUUCUCCGGUCUU-----------UUGAUGCCCAACGGUAUCUGA ---------.....................(((((((........)))))-----------))((((((....))))))... ( -12.50, z-score = -1.04, R) >droEre2.scaffold_4784 21436157 74 + 25762168 CCUCUCCAGAAAUAAUUCGUAAUAAGCAAUCCACGAACCCAAUCCGCAAUAAC--------UUGAUGCCCAACGGUAUCUGA ...............(((((............)))))................--------..((((((....))))))... ( -8.60, z-score = -0.72, R) >droYak2.chr3L 5470774 74 - 24197627 CCUCGUUGCAUAUGAUUUGUAAUAAGCAACGGAGAAACCUAAUCAGCAAUAAC--------UUGAUGCCCAACGGUAUCUGA (..((((((.(((........))).))))))..)...................--------..((((((....))))))... ( -17.50, z-score = -2.28, R) >droSec1.super_11 1693288 74 + 2888827 AUUCGCCACAUAUGAUUCGUAAUAAGGAAUAGAGAACCCCAGUCCGCAAUAUC--------UUGAUGCCCAACGGUAUCUGA ....((....((((...))))....(((...(......)...)))))......--------..((((((....))))))... ( -9.80, z-score = 0.82, R) >droSim1.chr3L 21118062 74 + 22553184 AUUCGCCACAUAUAAUUCGUAAUAAGGAAUAGAGAACCCCAGUCCGCAAUAUC--------UUGAUGCCCAACGGUAUCUGA .........................(((...(......)...)))........--------..((((((....))))))... ( -8.90, z-score = 0.76, R) >consensus CUUCGCCACAUAUGAUUCGUAAUAAGCAAUAGAGAACCCCAAUCCGCAAUAAC________UUGAUGCCCAACGGUAUCUGA ...............................................................((((((....))))))... ( -6.19 = -6.21 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:56 2011