| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,737,964 – 21,738,116 |
| Length | 152 |
| Max. P | 0.605325 |
| Location | 21,737,964 – 21,738,116 |
|---|---|
| Length | 152 |
| Sequences | 10 |
| Columns | 164 |
| Reading direction | reverse |
| Mean pairwise identity | 81.30 |
| Shannon entropy | 0.37699 |
| G+C content | 0.39804 |
| Mean single sequence MFE | -31.84 |
| Consensus MFE | -19.75 |
| Energy contribution | -19.93 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21737964 152 - 24543557 --UGUGAGCAUGUGUGUUUAUAUGCUUUUAUUUUCAAUUUUAUCAUUUCCCAUUU-AGACGAAAACAAAGUCACCCGAAGAACGUGACCAGCAUGGC---CAACAGCUGGCACGGUCAAGCCACUAACUUUGCUCA------UCACAAAGUUAAACCGACAAAA --((((((((((((....)))))))))..........(((..((...........-.))..))))))..(((.......((.((((.(((((.((..---...))))))))))).)).......((((((((....------...))))))))....))).... ( -36.60, z-score = -1.97, R) >droAna3.scaffold_13337 4059415 155 - 23293914 UGUUUGCUUGUGUGUUUCUAUAUGAAUUUAUUUUCAAUUUUAUCAUUUCCCAUUUAAGACGAAAACAAAGUCACCCGAAGAACGUGACCUGCAUGUC---CAACAGCUGGCACGGUCAAGUCACUAACUUUGCUCA------UCACAAAGUUAAACCUACAAAA .((((..(((.(((...((...((((......)))).(((..((.............))..)))....)).))).))).))))(((((.((..((((---((.....))).)))..)).)))))((((((((....------...))))))))........... ( -26.92, z-score = 0.04, R) >droEre2.scaffold_4784 21396738 152 - 25762168 --UGUGAGCAUGUGUGUUUAUAUGAAUUUAUUUUCAAUUUUAUCAUUUCCCAUUU-AGACGAAAACAAAGUCACCCGAAGAACGUGACCAGCAUGGC---CAACAGCUGGCACGGUCAAGCCACUAACUUUGCUCA------UCACAAAGUUAAAUCGACAGAA --((((((((....))))))))((((......))))......((...........-.(((.........)))...(((.((.((((.(((((.((..---...))))))))))).)).......((((((((....------...))))))))..)))...)). ( -35.10, z-score = -1.56, R) >droYak2.chr3L 5423934 152 + 24197627 --UGUGAGCGUGUGUGUUUAUAUGAAUUUAUUUUCAAUUUUAUCAUUUCCCAUUU-AGACGAAAACAAAGUCACCCGAAGAACGUGACCAGCAUGGC---CAACAGUGGGCACGGUCAAGCCACUAACUUUGCUCA------UCACAAAGUUAAACCGACAAAA --..(((.(((((.........((((......)))).............(((((.-.(((.........))).......(..((((.....))))..---)...)))))))))).)))......((((((((....------...))))))))........... ( -28.80, z-score = 0.71, R) >droSec1.super_11 1660079 154 - 2888827 --UGUGAGUAUGUGUGUUUAUAUGCAUUUAUUUUCAAUUUUAUCAUUUCCCAUUU-AGACGAAAACAAAGUCACCCGAAGAACGUGACCAGCAUGGC---CAACAGCUGGCACGGUCAAGCCACUAACUUUGCUCAU----CUCACAAAGUUAAACCGACAAAA --.((((.(.(((.((((((.(((..........................))).)-)))))...))).).)))).((..((.((((.(((((.((..---...))))))))))).)).......((((((((.....----....))))))))...))...... ( -33.97, z-score = -1.26, R) >droSim1.chr3L 21084010 152 - 22553184 --UGUGAGCAUGUGUGUUUAUAUGCAUUUAUUUUCAAUUUUAUCAUUUCCCAUUU-AGACGAAAACAAAGUCACCCGAAGAACGUGACCAGCAUGGC---CAACAGCUGGCACGGUCAAGCCACUAACUUUGCUCA------UCACAAAGUUAAACCGACAAAA --(((..(((((((....)))))))............(((..((...........-.))..))))))..(((.......((.((((.(((((.((..---...))))))))))).)).......((((((((....------...))))))))....))).... ( -35.30, z-score = -1.64, R) >dp4.chrXR_group6 8847859 135 + 13314419 -------------------AUAUGAAUUUAUUUUCAAUUUUAUCAUUUCCCAUUUAAGACGAAAACAAAGUCACCC-AAGAACGUGACCAGCAUGUC---CAACAGCUGGCACGGUCAAGCCACUAACUUUGCUCA------UCGCAAAGUUAAGCCAACAAAA -------------------...((((......)))).....................(((.........)))....-..((.((((.(((((.((..---...))))))))))).))..((...(((((((((...------..))))))))).))........ ( -31.70, z-score = -4.30, R) >droPer1.super_9 876747 135 + 3637205 -------------------AUAUGAAUUUAUUUUCAAUUUUAUCAUUUCCCAUUUAAGACGAAAACAAAGUCACCC-AAGAACGUGACUAGCAUGUC---CAACAGCUGGCACGGUCAAGCCACUAACUUUGCUCA------UCGCAAAGUUAAGCCAACAAAA -------------------...((((......)))).....................(((.........)))....-..((.((((.(((((.((..---...))))))))))).))..((...(((((((((...------..))))))))).))........ ( -29.40, z-score = -3.37, R) >droGri2.scaffold_15110 9552524 149 - 24565398 ----------CAAGAACAUGUGGCUAUUUA-UUUCAAUUUUCUCAAUUCGAAUUUAAGACGAAAACAAAGUCACCAAAAGUACGUGACCAGCAUGGUCAACAACAACUGGCACUGGUCAGCCACAAACUUUGCUCAUCACCAACACAAAGUUAAAUCGGC---- ----------...((...(((((((.....-..........................(((.........))).............((((((....((((........)))).)))))))))))))(((((((.............)))))))...))...---- ( -30.82, z-score = -1.69, R) >droMoj3.scaffold_6680 5955868 146 + 24764193 ----------UGAGAACAUGCGGCUAUUUA-UUUCAAUUUUCCCAAUUCGCAUUUAAGACGAAAACAAAGUCACCAAGUGUACGUGCCCGGCAUGCC---CAACAACUGGCACUGGUCAGCCGCAAACUUUGCUCAUCACCAACACAAGCUCAAAUCGAC---- ----------((((....(((((((.....-..................((((((..(((.........)))...))))))....(.((((..((((---........)))))))).)))))))).......))))........................---- ( -29.80, z-score = -0.23, R) >consensus __UGUGAG__UGUGUGUUUAUAUGAAUUUAUUUUCAAUUUUAUCAUUUCCCAUUU_AGACGAAAACAAAGUCACCCGAAGAACGUGACCAGCAUGGC___CAACAGCUGGCACGGUCAAGCCACUAACUUUGCUCA______UCACAAAGUUAAACCGACAAAA .........................................................(((.........))).......((.((((.(((((.((........))))))))))).)).......((((((((.............))))))))........... (-19.75 = -19.93 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:56 2011