Locus 8290

Sequence ID dm3.chr3L
Location 21,736,190 – 21,736,282
Length 92
Max. P 0.622056
window11394

overview

Window 4

Location 21,736,190 – 21,736,282
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 92.28
Shannon entropy 0.13644
G+C content 0.34285
Mean single sequence MFE -17.54
Consensus MFE -14.96
Energy contribution -15.96
Covariance contribution 1.00
Combinations/Pair 1.08
Mean z-score -1.62
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.27
SVM RNA-class probability 0.622056
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21736190 92 - 24543557
AAAUCUGUUCAUAAAUAUGGUACUUUGUAUCCAAAUUUAUUGUCGCUGUCUCUUUAAUAGAAUGCCGUGCUAAAUCCACGAAAAUCUCACAU
..........((((((.((((((...))).))).))))))....((..(((.......)))..))((((.......))))............ (  -9.30, z-score =   0.05, R)
>droEre2.scaffold_4784 21394931 92 - 25762168
AAAUCUGUUCAUAAAUAUGGUACUUUGUAUCCAAAUUUAUUGGAGCUGUCGCUUUAAUAGAAUGCCGUGGCAAAUUCACGAAAUUCUCACAU
...........(((((.((((((...))).))).)))))(((((((....))))))).(((((..(((((.....)))))..)))))..... ( -18.20, z-score =  -1.50, R)
>droYak2.chr3L 5422103 90 + 24197627
AAAUCUUUUCAUAAAUAUGGUACCUUGUAGCCAAAUUUAUUGGA--UGUCGCUUCAAUAGAAUGCCGUGGCAAAUUCACGAAACUCUCACAU
......((((((((((.((((........)))).))))))((((--((((((..((......))..))))))..)))).))))......... ( -15.20, z-score =  -0.65, R)
>droSec1.super_11 1658215 92 - 2888827
AAAUCUAUUCAUAAAUAUGGUACUUUGUAUCCAAAUUUAUUGGAGCUGUCGCUUCAAUAGAAUGCCGUGGUGAAUCCACGAAAAUCUCACAU
.......(((........((((.((((....))))(((((((((((....))))))))))).))))((((.....))))))).......... ( -22.50, z-score =  -3.00, R)
>droSim1.chr3L 21082160 92 - 22553184
AAAUCUAUUCAUAAAUAUGGUACUUUGUAUCCAAAUUUAUUGGAGCUGUCGCUUCAAUAGAAUGCCGUGGUGAAUCCACGAAAAUCUCACAU
.......(((........((((.((((....))))(((((((((((....))))))))))).))))((((.....))))))).......... ( -22.50, z-score =  -3.00, R)
>consensus
AAAUCUAUUCAUAAAUAUGGUACUUUGUAUCCAAAUUUAUUGGAGCUGUCGCUUCAAUAGAAUGCCGUGGUAAAUCCACGAAAAUCUCACAU
.......(((........((((.((((....))))(((((((((((....))))))))))).))))((((.....))))))).......... (-14.96 = -15.96 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:54 2011