| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,714,334 – 21,714,437 |
| Length | 103 |
| Max. P | 0.646387 |
| Location | 21,714,334 – 21,714,437 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 73.89 |
| Shannon entropy | 0.46401 |
| G+C content | 0.56693 |
| Mean single sequence MFE | -32.73 |
| Consensus MFE | -13.19 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21714334 103 - 24543557 CACAGCACCAGCACCAGUAA-AAAAUCCAGUUGGGUCUCGGGCCCAAGGUUUGGGC--CCAGUUAAGGCCAAAAGAGCUCCAGCCAGAGUUUUGCGGUAGCAACCC ..........(((((.((((-((..((..(((((..((((((((((.....)))))--)).((....)).....)))..)))))..)).))))))))).))..... ( -36.70, z-score = -2.53, R) >droEre2.scaffold_4784 21372273 79 - 25762168 -------------------------UCCAGUUGGAUCUCCAGCCCAAGGUUUGGGC--CCAGUUAAGGCCAAAAGAGCUGCAGCCCGAGUUUUGCGGUAGCAGCCC -------------------------....(((((....)))))..........(((--(.......))))......(((((.((((((...))).))).))))).. ( -25.50, z-score = -0.68, R) >droYak2.chr3L 5401540 97 + 24197627 ------ACCAGCACCAGCAA-CAGAUCCAGUUGGAUUCGAAGCCCAAGUUUUGGGC--CCAGUUAAGGCCAAAAGAGCUGCAGUCCGAGUUUUGCGGUAGCAACCC ------....(((((.((..-(..((((....))))..)..))...((((((.(((--(.......))))...))))))((((........))))))).))..... ( -28.20, z-score = -1.64, R) >droSec1.super_11 1635519 104 - 2888827 CACAGCACCAGCACCAGCAAUAAGAUCCAGUUGGGUCUCGGGCCCAAGGUUUGGGC--CCAGUUAAGGCCAAAAGAGAUGCAGCCAGAGUUUUGCGGUAGCAACCC ..........(((((.((((.....((..((((.((((((((((((.....)))))--)).((....)).....))))).))))..))...))))))).))..... ( -38.20, z-score = -2.83, R) >droSim1.chr3L 21058310 104 - 22553184 CACAGCACCAGCACCAGCAAUAAGAUCCAGUUGGGUCUCGGGCCCAAGGUUUGGGC--CCAGUUAAGGCCAAAAGAGAUGCAGCCAGAGUUUUGCGGUAGCAACCC ..........(((((.((((.....((..((((.((((((((((((.....)))))--)).((....)).....))))).))))..))...))))))).))..... ( -38.20, z-score = -2.83, R) >droPer1.super_9 854536 83 + 3637205 -------------------AGCAGCAGCAGUUCGAGCCCCGG-CCAAGACCUGAGCCACAAGCUAAGGCCAA---AGCCGCAGCUCAAUUUCUGCGGUAGCAGCCC -------------------....((((.((((.((((..(((-(...(.(((.(((.....))).))).)..---.))))..)))))))).))))(((....))). ( -29.60, z-score = -1.92, R) >consensus ______ACCAGCACCAGCAA_AAGAUCCAGUUGGAUCUCGGGCCCAAGGUUUGGGC__CCAGUUAAGGCCAAAAGAGCUGCAGCCAGAGUUUUGCGGUAGCAACCC .......................(((((....)))))....(((((.....)))))..........(((.............)))......((((....))))... (-13.19 = -13.42 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:54 2011