| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,686,142 – 21,686,234 |
| Length | 92 |
| Max. P | 0.967386 |
| Location | 21,686,142 – 21,686,234 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Shannon entropy | 0.39278 |
| G+C content | 0.40737 |
| Mean single sequence MFE | -25.26 |
| Consensus MFE | -18.71 |
| Energy contribution | -18.51 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21686142 92 + 24543557 ------UACAAUUGAGCUGAAAGCUCUUAACGCAAAUUCGAGCCAAGUU-----------AUUUCAUCCACAUGGUUUGCCCCUGCGUUCUUGAGUUAUUUCAGAGCAG ------......((..((((((((((..((((((....(((((((.((.-----------.........)).)))))))....))))))...))))..))))))..)). ( -27.10, z-score = -3.53, R) >droEre2.scaffold_4784 21343329 95 + 25762168 AUUUUGUACAAUUAAACUGAAUGCUCUUAACGCAAAUUCGAAUCAAGUUUUG-CCGAGAU-------------GGUUUACCCCUGCGUUCUUGAGUUAUUUCAGAGCAG ................(((((.((((..((((((.....((((((..((...-..))..)-------------))))).....))))))...))))...)))))..... ( -19.10, z-score = -1.02, R) >droYak2.chr3L 5372076 108 - 24197627 AUUUUGUACAACUAUACUUAAUGCUCUUAGCGGAAAUUCGAACUAAGUUGUG-CAGAUAUAUUUAGCCCAUAUGGUUUACCCCUGCGUUCUUGAGCUAUUUCAGAGCAG ..(((((((((((........(((.....)))(.....)......)))))))-)))).......((((.....)))).........(((((.(((....)))))))).. ( -19.80, z-score = 0.07, R) >droSec1.super_11 1606702 103 + 2888827 ------UACAAUUGAGCUGAAUGCUCUUAACGCAAAUUCGAGCCGAGUUUUGGUCGAGAUAUUUAAUCCAGAUGGUUUGCCCCUGCGUUCUUGAGUUUUUUCAGAACAG ------......((..(((((.((((..((((((....(((((((...(((((..............))))))))))))....))))))...))))...)))))..)). ( -28.24, z-score = -2.20, R) >droSim1.chr3L 21025026 103 + 22553184 ------UACAAUUGAGCUGAAUGCUCUUAACGCAAAUUCGAGCCGAGUUUUGGUCGAGAUAUUUAAUCCAGAUGGCUUGCCCCUGCGUUCUUGAGUUAUUUCAGAGCAG ------......((..(((((.((((..((((((....(((((((...(((((..............))))))))))))....))))))...))))...)))))..)). ( -32.04, z-score = -2.84, R) >consensus ______UACAAUUGAGCUGAAUGCUCUUAACGCAAAUUCGAGCCAAGUUUUG_CCGAGAUAUUUAAUCCAGAUGGUUUGCCCCUGCGUUCUUGAGUUAUUUCAGAGCAG ................(((((.((((..((((((....(((((((...........................)))))))....))))))...))))...)))))..... (-18.71 = -18.51 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:51 2011