| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,681,662 – 21,681,768 |
| Length | 106 |
| Max. P | 0.576185 |
| Location | 21,681,662 – 21,681,768 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.66 |
| Shannon entropy | 0.32268 |
| G+C content | 0.47998 |
| Mean single sequence MFE | -32.07 |
| Consensus MFE | -21.01 |
| Energy contribution | -21.18 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21681662 106 - 24543557 UGGGGCAGAAACAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCUUUUGACUAAAUUGCAUAGCCACAUGG---- .(((..........)))(((--((..(((((....(((..((((....))))..)))....)))))..))))).....((((..((.(......))).))))......---- ( -32.90, z-score = -1.91, R) >droSim1.chr3L 21020489 106 - 22553184 UGGGGCAGCAACAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUAGCCACAUGG---- ((.(((.((((.....((((--((..(((((....(((..((((....))))..)))....)))))..))))))((((.........)))).))))...))).))...---- ( -32.60, z-score = -1.03, R) >droSec1.super_11 1602190 106 - 2888827 UGGGGCAGCAACAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUAGCCACAUGG---- ((.(((.((((.....((((--((..(((((....(((..((((....))))..)))....)))))..))))))((((.........)))).))))...))).))...---- ( -32.60, z-score = -1.03, R) >droYak2.chr3L 5367197 106 + 24197627 UCUGGCAGCAACAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUCUGACUAAAUUGCAUAGCCACAUGG---- ..((((.((((......(((--((..(((((....(((..((((....))))..)))....)))))..)))))(((((.....)))))....))))...)))).....---- ( -34.60, z-score = -2.01, R) >droEre2.scaffold_4784 21338392 106 - 25762168 UGGGGCAGCAACAACCUGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCGAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUAGACACAUGG---- .......((((......(((--((.((((((....(((..((((....))))..)))....)))))).)))))(((((.....)))))....))))............---- ( -31.00, z-score = -1.31, R) >droAna3.scaffold_13337 4004761 105 - 23293914 AGAGGCAGC-ACAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUGGCCGCAUGG---- .......((-......((((--((..(((((....(((..((((....))))..)))....)))))..))))))....((((..((.(......))).))))))....---- ( -34.60, z-score = -1.39, R) >dp4.chrXR_group6 8795493 101 + 13314419 -----AAACGGCAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUGGCCACAUGG---- -----....(((....((((--((..(((((....(((..((((....))))..)))....)))))..)))))).....))).............((((....)))).---- ( -33.00, z-score = -1.81, R) >droPer1.super_9 821480 101 + 3637205 -----AAACGGCAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUGGCCACAUGG---- -----....(((....((((--((..(((((....(((..((((....))))..)))....)))))..)))))).....))).............((((....)))).---- ( -33.00, z-score = -1.81, R) >droWil1.scaffold_180698 10355446 103 + 11422946 -------GACAAAACCCGGC--AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCUUUGGCAUUGGCAUUG -------.......((((((--((..(((((....(((..((((....))))..)))....)))))..))))))...))(((..((.(((((....)))))))..))).... ( -34.50, z-score = -2.73, R) >droVir3.scaffold_13049 987605 86 + 25233164 -----------CAAGCCGGCAUAUACAAGUUUAUAGCGGAUG------CGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUGGCCA--------- -----------......(((........((((((.((....)------)))))))((((((((.(((((.(((.....))).)))))))))).)))...))).--------- ( -26.90, z-score = -1.24, R) >droMoj3.scaffold_6680 5893273 86 + 24764193 -----------CAAGCCGGCAUAUACAAGUUUAUAGCGGAUG------CGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUGGCCA--------- -----------......(((........((((((.((....)------)))))))((((((((.(((((.(((.....))).)))))))))).)))...))).--------- ( -26.90, z-score = -1.24, R) >droGri2.scaffold_15110 9501297 95 - 24565398 UAGAACCGGCAAAAGCCGGC--AUACAAGUUUAUAGCGGAUG------CGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUGGCCA--------- .....(((((....))))).--...........(((((((((------((....)))))))(((......))))))).((((..((.(......))).)))).--------- ( -32.20, z-score = -1.93, R) >consensus U__GGCAGCAACAACCCGGC__AUACGAGUUUAUAGCGGAUGCGUAAACGUAAACGCAUUUGGCUCAAAUGCCGUUAGGGCCUUUGACUAAAUUGCAUGGCCACAUGG____ .................(((........((((...(((..........)))))))((((((((.(((((.(((.....))).)))))))))).)))...))).......... (-21.01 = -21.18 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:50 2011