| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,659,064 – 21,659,165 |
| Length | 101 |
| Max. P | 0.875319 |
| Location | 21,659,064 – 21,659,165 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 72.38 |
| Shannon entropy | 0.45260 |
| G+C content | 0.55097 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -17.50 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21659064 101 + 24543557 GUGGUGGUCUGGUCAACUCCUACCGAUCGCCCCCGGUCACGCCUGUGAAAAAAUGAAGUGA-----AGUGAAGUGAUGGAGCUCUGCUUCCACACACU-UCUCUCUC-- ..(((((((.(((........)))))))))).....((((....))))........((.((-----((((..(((..(((((...)))))))).))))-)).))...-- ( -28.30, z-score = -0.91, R) >droSim1.chr3L 21002079 109 + 22553184 GUGGUGGUCUGGUCAACUCCUACCGAUCGCCCCCGGUCACGCCCGUUAAAAAAUGAAGUGAUGAGAAGUAAAGUGAAGGAGCUCUGCUCCCACACACUCUCUUUCUCUC ..(((((((.(((........))))))))))....(((((...((((....))))..)))))((((((.(.((((..(((((...)))))....)))).).)))))).. ( -33.00, z-score = -2.20, R) >droSec1.super_11 1579089 107 + 2888827 GUGGUGGUCUGGUCAACUCCUACCGAUCGCCCCCGGUCACGCACGUUAAAAAAUGAAGUGAAGAGAAGUAAAGUGAAGGAGCUCUGCUCCCACACACUCUCUCUCUC-- ..(((((((.(((........)))))))))).....((((...((((....))))..))))((((((((...(((..(((((...)))))..)))))).)))))...-- ( -31.50, z-score = -1.59, R) >droYak2.chr3L 5345295 79 - 24197627 GUGGUGGUCUGGUCAACUCCUACCGAUCGCCCCCGGUCACGCCCGUGAAAAA--------------------GUGAAGGAGCUCUGCUCCCACUUGCUU---------- ..(((((((.(((........)))))))))).....((((....))))..((--------------------(((..(((((...))))))))))....---------- ( -25.90, z-score = -1.66, R) >droEre2.scaffold_4784 21316168 76 + 25762168 GUGGUGGUCUGGUCAACUCGUACCGAUCGCCCCCUGUCACGCCCGUGAAAAA--------------------GUGAAGAGAGUACACUCUCGACGG------------- ..(((((((.((((.....).))))))))))..(((((.(((...(....).--------------------)))..(((((....))))))))))------------- ( -25.40, z-score = -1.52, R) >consensus GUGGUGGUCUGGUCAACUCCUACCGAUCGCCCCCGGUCACGCCCGUGAAAAAAUGAAGUGA_____AGU_AAGUGAAGGAGCUCUGCUCCCACACACU_UCU_UCUC__ ..(((((((.(((........)))))))))).....((((....))))........................(((..(((((...))))))))................ (-17.50 = -18.10 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:46 2011