| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,639,206 – 21,639,306 |
| Length | 100 |
| Max. P | 0.851946 |
| Location | 21,639,206 – 21,639,306 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.00 |
| Shannon entropy | 0.26676 |
| G+C content | 0.35648 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -15.61 |
| Energy contribution | -16.31 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21639206 100 - 24543557 AAUACUUCAGCCAUGGGUGAAUAUACAUAAACCCAUUCGAACUCUUACAAACACAUAAAUAGGUUUGCAUACGUGUGUCUAUUU--AUGUUUGUGUGCUUGA------- ......(((((.((((((............)))))).........(((((..(((((((((((..(((....)))..)))))))--))))))))).)).)))------- ( -22.90, z-score = -1.41, R) >droSim1.chr3L 20982049 100 - 22553184 AAUACUUCACCCAUGGGUGAAUAUACAUAAGCCCAUUCGAACUCUUACAAACACAUAAAUAUGUUUGCAUACGUGUGCUUAUUU--AUGGUUGUGUGCUUGA------- .....((((((....))))))......(((((......(....).(((((...((((((((.....((((....)))).)))))--))).))))).))))).------- ( -23.10, z-score = -1.37, R) >droSec1.super_11 1559337 100 - 2888827 AAUACUUCACCCAUGGGUGAAUAUACAUAAGCCCAUUCGAACUCUUACAAACACAUAAAUAUGUUUGCAUACGUGUGCUUAUUU--AUGUUUGUGUGCUUGA------- .....((((((....))))))..........................(((.((((((((((((...((((....)))).....)--))))))))))).))).------- ( -26.20, z-score = -2.94, R) >droYak2.chr3L 5324846 96 + 24197627 AACACCUCAACCAUGGGUGAAUAUACAUAAACCCAUUCGAUCUCUUACAAACACAUAAAUA----UGCAUACGUGUGCUUAUUU--AUGUUUGUGUGCUUGA------- ............((((((............))))))((((.(...(((((..(((((((((----.((((....)))).)))))--))))))))).).))))------- ( -22.30, z-score = -2.36, R) >droEre2.scaffold_4784 21296159 96 - 25762168 AAUACUUCAACCAUGGGUGAAUAUACAUAAACCCAUUCGAACUCUUACAAACACAUAAAUA----UGCAUACGUGUGCUUAUUU--AUGCUUGUGUGCUUAG------- ............((((((............)))))).........((((....((((((((----.((((....)))).)))))--)))....)))).....------- ( -19.60, z-score = -1.94, R) >droAna3.scaffold_13337 3964481 105 - 23293914 AAUAGUUUACCCAUGGGUGACUAUACAUAAGCCCAUUCGAACUUGUACAAACACAUAAAUA----UGCAUACUCGGAUCUAUCCGAGUGUUUGUGUGUUAUGUGCUUGA .((((((.(((....))))))))).................(..((((((((((((((...----...(((((((((....)))))))))))))))))).)))))..). ( -34.70, z-score = -4.26, R) >consensus AAUACUUCACCCAUGGGUGAAUAUACAUAAACCCAUUCGAACUCUUACAAACACAUAAAUA____UGCAUACGUGUGCUUAUUU__AUGUUUGUGUGCUUGA_______ ............((((((............))))))...........(((.((((((((((.....((((....)))).........)))))))))).)))........ (-15.61 = -16.31 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:42 2011