Locus 8279

Sequence ID dm3.chr3L
Location 21,606,281 – 21,606,375
Length 94
Max. P 0.953269
window11378

overview

Window 8

Location 21,606,281 – 21,606,375
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 78.16
Shannon entropy 0.42585
G+C content 0.27564
Mean single sequence MFE -15.86
Consensus MFE -8.34
Energy contribution -9.18
Covariance contribution 0.84
Combinations/Pair 1.35
Mean z-score -2.32
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.59
SVM RNA-class probability 0.953269
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21606281 94 + 24543557
AUUUUGUGAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAAUCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUCA
...(((((((((((.....)))))))))))....(((((.(....(((.((((((((....))))))))...)))...).)))))......... ( -20.40, z-score =  -3.75, R)
>droEre2.scaffold_4784 21261745 94 + 25762168
UUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCCAACAAAAUCCUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUCA
...((((.((((((.....)))))).)))).............((((..((((((((....)))))))).((....))))))............ ( -12.70, z-score =  -1.52, R)
>droYak2.chr3L 5292456 94 - 24197627
UUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCCAACAAAAUCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUCA
...((((.((((((.....)))))).))))...............(((.((((((((....))))))))...)))................... ( -14.60, z-score =  -2.07, R)
>droSec1.super_11 1526809 94 + 2888827
UUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAAUCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUCA
...((((.((((((.....)))))).))))....(((((.(....(((.((((((((....))))))))...)))...).)))))......... ( -16.40, z-score =  -2.63, R)
>droSim1.chr3L 20948058 94 + 22553184
UUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAAUCUUUACAAAUACACUAAUUUGUAUGUAGAAACGAUUGAAAUGCUCUCA
...((((.((((((.....)))))).))))....(((((.(....(((.(((((((......)))))))...)))...).)))))......... ( -15.60, z-score =  -2.36, R)
>triCas2.ChLG3 10767490 89 + 32080666
ACUGGACCGGUAAAAUAGUACUUUCCGACAUAAAUAUUAUGAAAGUA-----AAAUGUUCAUUACCGUACGGUUGAAGAAAAAAAAAGAAAUAA
((((...((((((((((.(((((((...............)))))))-----...))))..))))))..))))..................... ( -15.46, z-score =  -1.56, R)
>consensus
UUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAAUCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUCA
....(((.((((((.....)))))).)))................(((.((((((((....))))))))...)))................... ( -8.34 =  -9.18 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:41 2011