| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,578,277 – 21,578,354 |
| Length | 77 |
| Max. P | 0.746900 |
| Location | 21,578,277 – 21,578,354 |
|---|---|
| Length | 77 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 78.30 |
| Shannon entropy | 0.34197 |
| G+C content | 0.36710 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -9.93 |
| Energy contribution | -10.55 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21578277 77 - 24543557 GACUAGCAUAUACUCCGAU---AGGCAAAUACCGUUCAUAUCUGAAGGUAUCAAAAUUAUUUGGGUAUAAGCUUAACGUC (((.(((.(((((((.(((---((....(((((.((((....))))))))).....))))).))))))).)))....))) ( -21.50, z-score = -3.89, R) >droEre2.scaffold_4784 21232639 80 - 25762168 UACUAGCAUAUACUGGGAAUCUAGGCAAUUGCCGUUUAUAUCUGCAGCUACCGCAAUUAAUUGGGUAUAAGCCUAACUUC ..((((......))))(((..(((((....((.((........)).))((((.(((....)))))))...)))))..))) ( -17.20, z-score = -0.34, R) >droSec1.super_11 1498309 70 - 2888827 ----------UACUCCGAUAUUAGGCAAUUACCGUUCAUAUCUGAAGGUACCACAAUUAUUUGGGUAUAAGCUUAACGUC ----------......((..((((((....(((.((((....)))))))(((.(((....))))))....))))))..)) ( -16.40, z-score = -2.29, R) >droSim1.chr3L 20914518 69 - 22553184 ----------UACUCCGAUAUUAGGCAAUUACCGUUCAUAUAUGAAGGUA-CAAAAUUAUUUGGGUAUAAGCUUAACGUC ----------......((..((((((...((((.((((....))))))))-((((....)))).......))))))..)) ( -14.00, z-score = -1.71, R) >consensus __________UACUCCGAUAUUAGGCAAUUACCGUUCAUAUCUGAAGGUACCAAAAUUAUUUGGGUAUAAGCUUAACGUC ................(((.((((((...((((.((((....)))).....((((....))))))))...)))))).))) ( -9.93 = -10.55 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:32 2011