| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,577,714 – 21,577,855 |
| Length | 141 |
| Max. P | 0.815570 |
| Location | 21,577,714 – 21,577,816 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.85 |
| Shannon entropy | 0.24308 |
| G+C content | 0.41805 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -20.42 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.78 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21577714 102 + 24543557 UAAUAAAGCAAAUACAACAUCCUAAGCCAAUGUUUUGGUGCACAAAUUAUUGAUUUUAAAAAAGCGCAGGGAGUUUCCUUUUCGCGAUGCCCCUGCGACAUU ...........................(((((.((((.....)))).)))))...........((((((((.((.((........)).))))))))).)... ( -21.60, z-score = -0.94, R) >droSec1.super_11 1497756 78 + 2888827 ------------------------AGCUAAUGUUUUGGUGCACAAAUUAUUGAUUUUCGAAAAGCGCAGGGAGUUUCCUUUUCGCGAUGCCCCUGCGACAUU ------------------------...(((((.((((.....)))).)))))...........((((((((.((.((........)).))))))))).)... ( -19.50, z-score = -0.71, R) >droSim1.chr3L 20913974 78 + 22553184 ------------------------AGCUAAUGUUUUGGUGCACAAAUUAUUGAUUUUCGAAAAGCGCAGGGAGUUUCCUUUUCGCGAUGCCCCUGCGACAUU ------------------------...(((((.((((.....)))).)))))...........((((((((.((.((........)).))))))))).)... ( -19.50, z-score = -0.71, R) >consensus ________________________AGCUAAUGUUUUGGUGCACAAAUUAUUGAUUUUCGAAAAGCGCAGGGAGUUUCCUUUUCGCGAUGCCCCUGCGACAUU ...........................(((((.((((.....)))).)))))...........((((((((.((.((........)).))))))))).)... (-20.42 = -20.20 + -0.22)
| Location | 21,577,747 – 21,577,855 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 73.43 |
| Shannon entropy | 0.43056 |
| G+C content | 0.40897 |
| Mean single sequence MFE | -25.06 |
| Consensus MFE | -13.38 |
| Energy contribution | -14.75 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21577747 108 - 24543557 UGCUACC-UUCGCGUGCCUCCAUUAUUUUCAAAAUAGGAAAAUGUCGCAGGGGCAUCGCGAAAAGGAAACUCCCUGCGCUUUUUUAAAAUCAAUAAUUUGUGCACCAAA .....((-((((((((((((...(((((((.......))))))).....)))))).)))))..)))........(((((....................)))))..... ( -28.25, z-score = -1.87, R) >droAna3.scaffold_13337 6232596 86 + 23293914 -GCUACCUUUUGUAUUUGUAUAUUAUUUUCAAAAUAGAAUGUCGCCUCAAAGGUGCCGCUAAAAACAAACUCUCUUAGUGGGACAAA---------------------- -((.((.((((((.((((...........)))))))))).)).)).......((.(((((((............))))))).))...---------------------- ( -15.50, z-score = -1.16, R) >droSec1.super_11 1497765 108 - 2888827 UGCUACC-UUCGCGUGCCUCCAUUAUUUUCAAAAUAGGAAAAUGUCGCAGGGGCAUCGCGAAAAGGAAACUCCCUGCGCUUUUCGAAAAUCAAUAAUUUGUGCACCAAA .....((-((((((((((((...(((((((.......))))))).....)))))).)))))..)))........(((((....................)))))..... ( -28.25, z-score = -1.60, R) >droSim1.chr3L 20913983 108 - 22553184 UGCUACC-UUCGCGUGCCUCCAUUAUUUUCAAAAUAGGAAAAUGUCGCAGGGGCAUCGCGAAAAGGAAACUCCCUGCGCUUUUCGAAAAUCAAUAAUUUGUGCACCAAA .....((-((((((((((((...(((((((.......))))))).....)))))).)))))..)))........(((((....................)))))..... ( -28.25, z-score = -1.60, R) >consensus UGCUACC_UUCGCGUGCCUCCAUUAUUUUCAAAAUAGGAAAAUGUCGCAGGGGCAUCGCGAAAAGGAAACUCCCUGCGCUUUUCGAAAAUCAAUAAUUUGUGCACCAAA .((.....((((((((((((...(((((((.......))))))).....)))))).)))))).((....))......)).............................. (-13.38 = -14.75 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:31 2011